CX070004

Overview
NameCX070004
Unique NameCX070004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2984 contig Csv1_Contig2984:327..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.956e-27
Identity = 63/103 (61.17%), Postives = 71/103 (68.93%), Query Frame = -1
Query:  136 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIAISG 444
            RETPEAHVFKADLPGL             VL+ISG+R +EKEDKNDTWHRVERSSG F+RRFRLPENVKMDQ+KA+ME+G                K+I ISG
Sbjct:   51 RETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 6.747e-27
Identity = 63/103 (61.17%), Postives = 69/103 (66.99%), Query Frame = -1
Query:  136 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIAISG 444
            +ETPEAHVFKADLPGL             VLQISG+R +EKEDKNDTWHRVERSSG F RRFRLPEN KMDQ+KASME+G                K+I ISG
Sbjct:   52 KETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.374e-26
Identity = 61/103 (59.22%), Postives = 69/103 (66.99%), Query Frame = -1
Query:  136 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIAISG 444
            +ETPEAHVFKAD+PGL             VLQISG+R +EKEDKNDTWHRVERSSG F RRFRLPEN K++Q+KASME+G                KAI ISG
Sbjct:   59 KETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 7.460e-26
Identity = 60/103 (58.25%), Postives = 70/103 (67.96%), Query Frame = -1
Query:  136 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIAISG 444
            +ETPEAHVFKAD+PGL             VLQISG+R +EKEDKNDTWHRVERSSG F+RRFRLPEN K++++KASME+G                KAI ISG
Sbjct:   52 KETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.743e-26
Identity = 56/80 (70.00%), Postives = 62/80 (77.50%), Query Frame = -1
Query:  205 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 444
            +ETPEAHVFKADLPGL             VLQISG+R +EKEDKND WHRVERSSG F RRFRLPEN KMDQ+KA+ME+G
Sbjct:   41 KETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENG 120          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.273e-25
Identity = 61/103 (59.22%), Postives = 68/103 (66.02%), Query Frame = -1
Query:  136 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIAISG 444
            +ETPEAHVFKAD+PGL             VLQISG+R +EKEDKNDTWHRVERSSG   RRFRLPEN K+DQ+KASME+G                KAI ISG
Sbjct:   51 KETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.273e-25
Identity = 61/103 (59.22%), Postives = 68/103 (66.02%), Query Frame = -1
Query:  136 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIAISG 444
            +ETPEAHVFKADLPGL             VLQISG+R +EKEDKND WHRVERSSG F RRFRLPEN KMD++KASME+G                K+I ISG
Sbjct:   56 KETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.171e-25
Identity = 60/103 (58.25%), Postives = 69/103 (66.99%), Query Frame = -1
Query:  136 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIAISG 444
            +ETPEAHVF+AD+PGL             VLQISG+R +EKEDKNDTWHRVERSSG F RRFRLPEN K++Q+KASME+G                KAI ISG
Sbjct:   51 KETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.702e-25
Identity = 54/80 (67.50%), Postives = 62/80 (77.50%), Query Frame = -1
Query:  205 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 444
            +ETPEAHVFKADLPG+             VLQISG+R +EKEDKND WHR+ERSSG F RRFRLPEN KMDQ+KA+ME+G
Sbjct:   56 KETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENG 135          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.836e-25
Identity = 61/103 (59.22%), Postives = 67/103 (65.05%), Query Frame = -1
Query:  136 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIAISG 444
            +ETPEAHVFKADLPGL             VLQISG+R +EKEDKND W RVERSSG F RRFRLPEN KMDQ+KASME+G                K+I ISG
Sbjct:   52 KETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154          
The following BLAST results are available for this feature:
BLAST of CX070004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
HS17B_ARATH3.956e-2761.1717.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP12_SOLPE6.747e-2761.1717.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP16_SOYBN4.374e-2659.2218.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP14_SOYBN7.460e-2658.2517.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_MEDSA9.743e-2670.0018.1 kDa class I heat shock protein (Fragment) OS=... [more]
HSP11_SOYBN1.273e-2559.2217.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA1.273e-2559.2218.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP13_SOYBN2.171e-2558.2517.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA3.702e-2567.5018.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_SOLPE4.836e-2559.2217.7 kDa class I heat shock protein OS=Solanum per... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14C01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14C01-E2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070004 ID=CX070004; Name=CX070004; organism=Citrus sinensis; type=EST; length=444bp
TACCGCGGCCCCCCCCAAAGCTCAAATGAACAGAATACCATTACACAAAC
ATTCATGCAAGCAAATTACAAAACCAAAACATCACAGCATCCTTATACAA
GTATGCATAAAGACATACAGACAGACACTGGTTTAACCAGAGATTGCGAT
AGCCTTAACATCAGGTTTGGTCACCTCCACTTTCGGAACAGTAACAGTGA
GCACACCACTCTCCATGGAAGCCTTAATCTGATCCATCTTCACATTCTCA
GGCAGCCTGAACCTCCTTGAGAACATGCCACTGCTACGCTCAACGCGATG
CCACGTGTCGTTCTTGTCTTCCTTCTCAATCTTCCTCTGACCGCTTATCT
GAAGCACCCTGTCATCTTCGACCTCGACCTTCACTTCCTCTTTCCTCAGC
CCCGGAAGATCGGCCTTGAACACGTGGGCTTCCGGGGTTTCCCT
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