CX069998

Overview
NameCX069998
Unique NameCX069998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6956 contig Csv1_Contig6956:1066..1782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069998 vs. ExPASy Swiss-Prot
Match: DHAR1_ARATH (Glutathione S-transferase DHAR1, mitochondrial OS=Arabidopsis thaliana GN=DHAR1 PE=1 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 5.709e-79
Identity = 139/188 (73.94%), Postives = 162/188 (86.17%), Query Frame = 3
Query:    3 RALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEEKYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKTKAEKQYVIAGWAPKVN 566
            RALLTLEEK + YK HLIN+SDKPQWF++ISP+GKVPV+K DDKWV DSDVIV I+EEKYP+P L  P EFAS+GS IF +F  FLKSKD NDG+E ALL EL+AL+ HLK+H GPFIAGE+V+AVDLSLAPKLYHLQVAL HFK W+VPES  HVH YMK LF+L+SF+KTK E++YVI+GWAPKVN
Sbjct:   25 RALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLKTPAEFASVGSNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTEEKYVISGWAPKVN 212          
BLAST of CX069998 vs. ExPASy Swiss-Prot
Match: CLIC1_HUMAN (Chloride intracellular channel protein 1 OS=Homo sapiens GN=CLIC1 PE=1 SV=4)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 51/195 (26.15%), Postives = 93/195 (47.69%), Query Frame = 3
Query:    3 RALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEE-----KYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKT 518
            R  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y+   +A E F  T
Sbjct:   29 RLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of CX069998 vs. ExPASy Swiss-Prot
Match: CLIC1_RAT (Chloride intracellular channel protein 1 OS=Rattus norvegicus GN=Clic1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 51/195 (26.15%), Postives = 92/195 (47.18%), Query Frame = 3
Query:    3 RALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEE-----KYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKT 518
            R  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP    S G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y+   +A E F  T
Sbjct:   29 RLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTS-GLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of CX069998 vs. ExPASy Swiss-Prot
Match: CLIC1_MOUSE (Chloride intracellular channel protein 1 OS=Mus musculus GN=Clic1 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 51/195 (26.15%), Postives = 92/195 (47.18%), Query Frame = 3
Query:    3 RALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEE-----KYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKT 518
            R  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP    S G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y+   +A E F  T
Sbjct:   29 RLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAMLCPPRYPKLAALNPESNTS-GLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of CX069998 vs. ExPASy Swiss-Prot
Match: CLIC1_BOVIN (Chloride intracellular channel protein 1 OS=Bos taurus GN=CLIC1 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 49/195 (25.13%), Postives = 93/195 (47.69%), Query Frame = 3
Query:    3 RALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEE-----KYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKT 518
            R  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +++P+    VH Y++  +A E F  T
Sbjct:   29 RLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPDEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFSIPDVFRGVHRYLRNAYAREEFAST 222          
BLAST of CX069998 vs. ExPASy Swiss-Prot
Match: CLIC1_RABIT (Chloride intracellular channel protein 1 OS=Oryctolagus cuniculus GN=CLIC1 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 51/195 (26.15%), Postives = 91/195 (46.67%), Query Frame = 3
Query:    3 RALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEE-----KYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKT 518
            R  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  +  + +T+PE    VH Y+   +A E F  T
Sbjct:   29 RLFMVLWLKGVTFNVTTVDTKRRTETVHKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGVDIFAKFSAYIKNSNPALNDNLEKGLLKALKILDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKNRGFTIPEVFRGVHRYLSNAYAREEFAST 222          
BLAST of CX069998 vs. ExPASy Swiss-Prot
Match: CLIC3_HUMAN (Chloride intracellular channel protein 3 OS=Homo sapiens GN=CLIC3 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 54/214 (25.23%), Postives = 91/214 (42.52%), Query Frame = 3
Query:    3 RALLTLEEKKVPYKRHLINISDKPQWFMEISPEGKVPVVKFDDKWVADSDVIVRIVEEKYPEPSLTNPPEFASL----------GSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKTH------GGP--------FIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKTKAEKQYVIAGWAPKVN 566
            R  + L  K VP+    ++    P    + +P  ++P++ +D     D+  I   +EE         PP+F SL          G+ +F  F  F+K+  P  ++   Q LL  L  LD +L+        G P        F+ G+++T  D SL PKL+ +     HF+Q  +P  L  V  Y+      + F+ T      ++A + P V+
Sbjct:   27 RLFMVLLLKGVPFTLTTVDTRRSPDVLKDFAPGSQLPILLYDSDAKTDTLQIEDFLEETL------GPPDFPSLAPRYRESNTAGNDVFHKFSAFIKNPVPAQDEALYQQLLRALARLDSYLRAPLEHELAGEPQLRESRRRFLDGDRLTLADCSLLPKLHIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAYRPAVH 234          
The following BLAST results are available for this feature:
BLAST of CX069998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
DHAR1_ARATH5.709e-7973.94Glutathione S-transferase DHAR1, mitochondrial OS=... [more]
CLIC1_HUMAN3.192e-1326.15Chloride intracellular channel protein 1 OS=Homo s... [more]
CLIC1_RAT4.168e-1326.15Chloride intracellular channel protein 1 OS=Rattus... [more]
CLIC1_MOUSE4.168e-1326.15Chloride intracellular channel protein 1 OS=Mus mu... [more]
CLIC1_BOVIN2.702e-1225.13Chloride intracellular channel protein 1 OS=Bos ta... [more]
CLIC1_RABIT7.861e-1226.15Chloride intracellular channel protein 1 OS=Orycto... [more]
CLIC3_HUMAN2.287e-1125.23Chloride intracellular channel protein 3 OS=Homo s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_14B08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14B08-C16-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069998 ID=CX069998; Name=CX069998; organism=Citrus sinensis; type=EST; length=717bp
AAAGAGCTTTGCTTACTTTGGAGGAAAAGAAAGTTCCATACAAGCGTCAC
CTGATCAATATCAGTGACAAGCCTCAATGGTTTATGGAGATAAGCCCAGA
AGGGAAAGTACCTGTGGTAAAGTTTGATGACAAGTGGGTGGCTGACTCTG
ATGTGATTGTTAGAATTGTTGAGGAGAAGTATCCTGAGCCTTCTCTTACC
AATCCTCCTGAATTTGCCTCTCTTGGATCAAAGATATTCCCATCTTTTGT
CAATTTCTTGAAGAGCAAGGACCCAAATGATGGGACAGAGCAAGCTTTGC
TGGAGGAATTGAAAGCATTGGATGAGCATCTTAAGACCCATGGAGGTCCA
TTCATTGCTGGAGAGAAGGTCACTGCTGTAGATTTGAGCTTGGCACCAAA
GCTGTACCACCTTCAGGTAGCTCTTGAACATTTCAAGCAGTGGACTGTCC
CTGAGAGCTTGGCTCATGTCCATGGGTACATGAAGAAGCTTTTTGCCCTG
GAATCCTTTCAGAAGACTAAGGCTGAAAAGCAATACGTGATTGCAGGATG
GGCGCCGAAGGTCAATGCATGAACTAGTTCTAAGCTATGCGGTGTTTGAA
ATCTAGCTAATGAAATGCGAGTAATGTATGTGTGAGACTTGGAGCATAAT
TAGAATGTTCACTGGGGGTTTGTATCATCCAATAAAGGTAGCTACAATGA
TATTTGCTATTTGTTAT
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