CX069994

Overview
NameCX069994
Unique NameCX069994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069994 vs. ExPASy Swiss-Prot
Match: POL2_MOUSE (Retrovirus-related Pol polyprotein LINE-1 OS=Mus musculus GN=Pol PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.257e-24
Identity = 84/255 (32.94%), Postives = 128/255 (50.20%), Query Frame = -1
Query:   26 HILNSQGTIAPLNHTYIALISKIGKPRK----VIDFRPISLYNVIYRIVAKSVANIFKQILLKIISPLQSAFIPNRLITDNIIVGCECLHKIRHCKGKRNGLIALKLDVSKAYDRLEWNFLEQTLKQLGFSHQWISLIMRCISSVSFSVLINGAVKGLIKPQRGLRQGCPLSPYLFITCAEAFSSLLQQAEQQRLIHGLSFG-NDLKISHLLFADDSLVFSRASMVDCRNLKMILECYSTASGQIFNFEKSSLFL 775
            H +  +GT+   N  Y A I+ I KP+K    + +FRPISL N+  +I+ K +AN  ++ +  II P Q  FIP      NI      +H I   K K + +I+L  D  KA+D+++  F+ + L++ G    ++++I    S    ++ +NG     I  + G RQGCPLSPYLF    E    L +   QQ+ I G+  G  ++KIS  L ADD +V+        R L  ++  +    G   N  KS  FL
Sbjct:  504 HKIEVEGTLP--NSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYINKLKDKNHMIISL--DAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEV---LARAIRQQKEIKGIQIGKEEVKIS--LLADDMIVYISDPKNSTRELLNLINSFGEVVGYKINSNKSMAFL 749          
BLAST of CX069994 vs. ExPASy Swiss-Prot
Match: YTX2_XENLA (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis PE=4 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.642e-24
Identity = 78/240 (32.50%), Postives = 128/240 (53.33%), Query Frame = -1
Query:   14 IALISKIGKPRKVIDFRPISLYNVIYRIVAKSVANIFKQILLKIISPLQSAFIPNRLITDNIIVGCECLHKIRHCKGKRNGLIA--LKLDVSKAYDRLEWNFLEQTLKQLGFSHQWISLIMRCISSVSFSVLINGAVKGLIKPQRGLRQGCPLSPYLFITCAEAFSSLLQQAEQQRLIHGLSFGNDLKISHLLFADDSLVFSRASMVDCRNLKMILECYSTASGQIFNFEKSSLFLSGNV 727
            ++L+ K G  R + ++RP+SL +  Y+IVAK+++   K +L ++I P QS  +P R I DN+ +  + LH  R     R GL    L LD  KA+DR++  +L  TL+   F  Q++  +    +S    V IN ++   +   RG+RQGCPLS  L+    E F  LL    ++RL   +    D+++    +ADD ++ ++  +VD    +   E Y+ AS    N+ KSS  L G++
Sbjct:  510 LSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVFLIRDLLHFAR-----RTGLSLAFLSLDQEKAFDRVDHQYLIGTLQAYSFGPQFVGYLKTMYASAECLVKINWSLTAPLAFGRGVRQGCPLSGQLYSLAIEPFLCLL----RKRLTGLVLKEPDMRVVLSAYADDVILVAQ-DLVDLERAQECQEVYAAASSARINWSKSSGLLEGSL 739          
BLAST of CX069994 vs. ExPASy Swiss-Prot
Match: LIN1_NYCCO (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.096e-23
Identity = 76/238 (31.93%), Postives = 121/238 (50.84%), Query Frame = -1
Query:   17 IALISKIGK-PRKVIDFRPISLYNVIYRIVAKSVANIFKQILLKIISPLQSAFIPNRLITDNIIVGCECLHKIRHCKGKRNGLIALKLDVSKAYDRLEWNFLEQTLKQLGFSHQWISLIMRCISSVSFSVLINGAVKGLIKPQRGLRQGCPLSPYLFITCAEAFSSLLQQAEQQRLIHGLSFGNDLKISHLLFADDSLVFSRASMVDCRNLKMILECYSTASGQIFNFEKSSLFLSGN 727
            I LI K GK P +  ++RPISL N+  +I+ K + N  +Q + KII   Q  FIP      NI      +  I   K K +  + L +D  KA+D ++  F+ +TLK++G    ++ LI    S  + ++++NG        + G RQGCPLSP LF    E  +  ++   +++ I G+  G++ +I   LFADD +V+   +      L  +++ YS  SG   N  KS  F+  N
Sbjct:  513 ITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINVIQHINKLKNKDH--MILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQGCPLSPLLFNIVMEVLAIAIR---EEKAIKGIHIGSE-EIKLSLFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYTN 744          
BLAST of CX069994 vs. ExPASy Swiss-Prot
Match: M1250_ARATH (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.703e-13
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = -1
Query:  140 LINGAVKGLIKPQRGLRQGCPLSPYLFITCAEAFSSLLQQAEQQRLIHGLSFGNDL-KISHLLFADDS 340
            +INGA +GL+ P RGLRQG PLSPYLFI C E  S L ++A++Q  + G+   N+  +I+HLLFADD+
Sbjct:   13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINHLLFADDT 80          
The following BLAST results are available for this feature:
BLAST of CX069994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
POL2_MOUSE1.257e-2432.94Retrovirus-related Pol polyprotein LINE-1 OS=Mus m... [more]
YTX2_XENLA1.642e-2432.50Transposon TX1 uncharacterized 149 kDa protein OS=... [more]
LIN1_NYCCO3.096e-2331.93LINE-1 reverse transcriptase homolog OS=Nycticebus... [more]
M1250_ARATH1.703e-1354.41Uncharacterized mitochondrial protein AtMg01250 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_14B06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14B06-C12-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069994 ID=CX069994; Name=CX069994; organism=Citrus sinensis; type=EST; length=790bp
CTTGATCTTGCTAGACATTTCCACTTAAAAAAAGAGAAGATTTCTCGAAA
TTAAAGATTTGACCGGAAGCTGTGGAGTAGCACTCAAGGATCATCTTCAG
ATTTCGACAGTCGACCATAGAAGCTCTGCTGAAGACAAGGCTGTCATCAG
CAAATAAAAGGTGTGAAATCTTCAAATCGTTTCCAAATGATAGCCCATGG
ATAAGCCGTTGTTGCTCAGCCTGCTGTAGCAAGGAAGAAAAAGCCTCTGC
ACATGTAATAAACAAATACGGAGAGAGGGGGCAACCTTGTCTTAAGCCCC
TTTGGGGTTTAATTAAGCCTTTCACTGCACCATTTATTAATACAGAGAAG
GAAACCGAACTAATGCACCTCATGATCAAGCTAATCCATTGATGCGAGAA
GCCTAGTTGTTTCAAAGTTTGCTCTAGGAAATTCCATTCCAATCTGTCAT
AGGCTTTACTAACATCAAGCTTTAATGCAATTAAACCATTTCGCTTTCCT
TTACAATGCCTTATCTTGTGCAAACATTCGCAGCCAACTATGATGTTGTC
AGTGATCAACCTATTAGGGATGAAGGCACTTTGCAACGGAGAGATGATTT
TGAGCAAAATTTGCTTAAATATATTGGCTACTGACTTAGCTACAATTCTA
TATATAACATTGTACAAACTAATAGGCCTAAAATCTATCACTTTCCTAGG
CTTCCCGATTTTTGATATCAAAGCAATGTAAGTGTGATTTAGAGGGGCTA
TGGTACCTTGTGAATTGAGAATATGCAGACAAGTGGTGAG
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