CX069987

Overview
NameCX069987
Unique NameCX069987
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069987_ssr209 microsatellite CX069987_ssr209:209..220. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7925 contig Csv1_Contig7925:414..1266. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069987 vs. ExPASy Swiss-Prot
Match: PER3_ARMRU (Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.642e-71
Identity = 140/222 (63.06%), Postives = 160/222 (72.07%), Query Frame = -1
Query:  188 TIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNSNIATRSSSSEGDLVSS 853
            TIA++ SV LSGGP W VPLGRRDS  A   LAN  LP PF TL +LK +F +VGLN   DLVALSG HTFGRAQCQF   RLY+FN T +PDPTLD T+L QLR LCPQ GNG VL NFDV TP+ FD +Y++NLR  KGL+QSDQELFSTPGADT  +V  +  N  AFF  FV +MIRMGNL+PLTG QGEIR NCR VN       R   ++  +VSS
Sbjct:  131 TIASQISVLLSGGPWWPVPLGRRDSVEAFFDLANTALPSPFFTLAQLKKAFADVGLNRPSDLVALSGGHTFGRAQCQFVTPRLYNFNGTNRPDPTLDPTYLVQLRALCPQNGNGTVLVNFDVVTPNTFDRQYYTNLRNGKGLIQSDQELFSTPGADTIPLVNLYSSNTFAFFGAFVDAMIRMGNLRPLTGTQGEIRQNCRVVNSR----IRGMENDDGVVSS 348          
BLAST of CX069987 vs. ExPASy Swiss-Prot
Match: PER22_ARATH (Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=1 SV=2)

HSP 1 Score: 268.47 bits (685), Expect = 3.451e-71
Identity = 131/203 (64.53%), Postives = 156/203 (76.85%), Query Frame = -1
Query:  245 TIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 853
            TIA++ SV LSGGP W VPLGRRDS  A  ALAN  LP PF  L +LK++F +VGLN   DLVALSG HTFGRAQCQF   RLY+FN T  PDP+L+ T+L +LR+LCPQ GNG VL NFDV TPD FD++Y++NLR  KGL+QSDQELFSTPGADT  +V  +  + + FF+ F+ +MIRMGNL+PLTG QGEIR NCR VN
Sbjct:  131 TIASQISVLLSGGPWWPVPLGRRDSVEAFFALANTALPSPFFNLTQLKTAFADVGLNRTSDLVALSGGHTFGRAQCQFVTPRLYNFNGTNSPDPSLNPTYLVELRRLCPQNGNGTVLVNFDVVTPDAFDSQYYTNLRNGKGLIQSDQELFSTPGADTIPLVNQYSSDMSVFFRAFIDAMIRMGNLRPLTGTQGEIRQNCRVVN 333          
BLAST of CX069987 vs. ExPASy Swiss-Prot
Match: PER15_IPOBA (Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 6.508e-70
Identity = 130/202 (64.36%), Postives = 155/202 (76.73%), Query Frame = -1
Query:  245 IAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 850
            +A+E SV+L+GGPSW V LGRRD RTAN+  AN +LP PF+ L  L   F NVGLN   DLVALSGAHTFGRAQC+ F  RL++F+NTG PDPTL+ T+L  L+++CPQGG+G  + N D TTPD FDN YFSNL+  +GLLQSDQELFST GA T AIV +F  NQ AFF++FV SMI MGN+ PLTG+ GEIR NCRR N
Sbjct:  127 LASESSVSLAGGPSWNVLLGRRDRRTANQGGANTSLPSPFENLTNLTQKFTNVGLNVN-DLVALSGAHTFGRAQCRTFSPRLFNFSNTGNPDPTLNTTYLATLQQICPQGGSGFTVTNLDPTTPDTFDNNYFSNLQTNRGLLQSDQELFSTSGAPTIAIVNNFSANQTAFFESFVQSMINMGNISPLTGSNGEIRSNCRRPN 327          
BLAST of CX069987 vs. ExPASy Swiss-Prot
Match: PER1A_ARMRU (Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE=1 SV=2)

HSP 1 Score: 262.307 bits (669), Expect = 2.473e-69
Identity = 131/207 (63.29%), Postives = 153/207 (73.91%), Query Frame = -1
Query:  236 TIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNS 853
            TIAA++SV L+GGPSW VPLGRRDS  A   LAN NLP PF TL +LK SFRNVGLN   DLVALSG HTFG+ QC+F   RLY+F+NTG PDPTL+ T+LQ LR LCP  GN   L +FD+ TP +FDNKY+ NL  +KGL+QSDQELFS+P A DT  +V  F  +   FF  FV +M RMGN+ PLTG QG+IRLNCR VN NS
Sbjct:  132 TIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRVVNSNS 338          
BLAST of CX069987 vs. ExPASy Swiss-Prot
Match: PERE5_ARMRU (Peroxidase E5 OS=Armoracia rusticana GN=HRPE5 PE=1 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 4.219e-69
Identity = 130/203 (64.04%), Postives = 154/203 (75.86%), Query Frame = -1
Query:  245 TIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 853
            TIA++ SV LSGGPSWAVPLGRRDS  A   LAN  LP PF TL +LK +F +VGLN   DLVALSG HTFGRA+C F   RLY+FN T +PDPTL+ ++L  LR+LCP+ GNG VL NFDV TP+ FDN++++NLR  KGL+QSDQELFSTPGADT  +V  +  N  +FF  F  +MIRMGNL+PLTG QGEIR NCR VN
Sbjct:  102 TIASQISVLLSGGPSWAVPLGRRDSVEAFFDLANTALPSPFFTLAQLKKAFADVGLNRPSDLVALSGGHTFGRARCLFVTARLYNFNGTNRPDPTLNPSYLADLRRLCPRNGNGTVLVNFDVMTPNTFDNQFYTNLRNGKGLIQSDQELFSTPGADTIPLVNLYSSNTLSFFGAFADAMIRMGNLRPLTGTQGEIRQNCRVVN 304          
BLAST of CX069987 vs. ExPASy Swiss-Prot
Match: PER1C_ARMRU (Peroxidase C1C (Fragment) OS=Armoracia rusticana GN=PRXC1C PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 5.510e-69
Identity = 131/207 (63.29%), Postives = 155/207 (74.88%), Query Frame = -1
Query:  236 TIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNS 853
            TIAA++SV L+GGPSW VPLGRRDSR A   LAN NLP P  TL ELK++F NVGLN   DLVALSG HTFG+ QC+F   RLY+F+NTG PDPTL+ T+LQ LR+ CP+ GN  VL +FD+ TP VFDNKY+ NL+ +KGL+QSDQELFS+P A DT  +V  +      FF  FV +M RMGN+ PLTG QGEIRLNCR VN NS
Sbjct:  111 TIAAQQSVNLAGGPSWRVPLGRRDSRQAFLDLANANLPAPSFTLPELKAAFANVGLNRPSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRQQCPRNGNQSVLVDFDLRTPTVFDNKYYVNLKEQKGLIQSDQELFSSPNATDTIPLVRSYADGTQTFFNAFVEAMNRMGNITPLTGTQGEIRLNCRVVNSNS 317          
BLAST of CX069987 vs. ExPASy Swiss-Prot
Match: PER34_ARATH (Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=1 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 9.398e-69
Identity = 131/207 (63.29%), Postives = 153/207 (73.91%), Query Frame = -1
Query:  236 TIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNS 853
            TIAA++SV L+GGPSW VPLGRRDS  A   LAN NLP PF TL +LK+SFRNVGL+   DLVALSG HTFG+ QCQF   RLY+F+NTG PDPTL+ T+LQ LR LCP  GN   L +FD+ TP VFDNKY+ NL+ RKGL+QSDQELFS+P A DT  +V  +      FF  FV +M RMGN+ P TG QG+IRLNCR VN NS
Sbjct:  132 TIAAQQSVTLAGGPSWRVPLGRRDSLQAFLELANANLPAPFFTLPQLKASFRNVGLDRPSDLVALSGGHTFGKNQCQFILDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNRSALVDFDLRTPTVFDNKYYVNLKERKGLIQSDQELFSSPNATDTIPLVRAYADGTQTFFNAFVEAMNRMGNITPTTGTQGQIRLNCRVVNSNS 338          
BLAST of CX069987 vs. ExPASy Swiss-Prot
Match: PER23_ARATH (Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 9.398e-69
Identity = 130/203 (64.04%), Postives = 151/203 (74.38%), Query Frame = -1
Query:  245 TIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 853
            TIA++ SV LSGGP W VPLGRRDS  A  ALAN  LP PF TL +LK++F +VGLN   DLVALSG HTFG+AQCQF   RLY+FN T +PDP+L+ T+L +LR+LCPQ GNG VL NFD  TP  FD +Y++NL   KGL+QSDQ LFSTPGADT  +V  +  N   FF  FV +MIRMGNLKPLTG QGEIR NCR VN
Sbjct:  131 TIASQISVLLSGGPWWPVPLGRRDSVEAFFALANTALPSPFSTLTQLKTAFADVGLNRPSDLVALSGGHTFGKAQCQFVTPRLYNFNGTNRPDPSLNPTYLVELRRLCPQNGNGTVLVNFDSVTPTTFDRQYYTNLLNGKGLIQSDQVLFSTPGADTIPLVNQYSSNTFVFFGAFVDAMIRMGNLKPLTGTQGEIRQNCRVVN 333          
BLAST of CX069987 vs. ExPASy Swiss-Prot
Match: PER33_ARATH (Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.315e-67
Identity = 128/207 (61.84%), Postives = 155/207 (74.88%), Query Frame = -1
Query:  236 TIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNS 853
            TIAA++SV L+GGPSW VPLGRRDS  A   LAN NLP PF TL +LK++F+NVGL+   DLVALSGAHTFG+ QC+F   RLY+F+NTG PDPTL+ T+LQ LR  CP+ GN  VL +FD+ TP VFDNKY+ NL+ +KGL+QSDQELFS+P A DT  +V  +      FF  FV +M RMGN+ P TG QG+IRLNCR VN NS
Sbjct:  133 TIAAQQSVTLAGGPSWKVPLGRRDSLQAFLDLANANLPAPFFTLPQLKANFKNVGLDRPSDLVALSGAHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGQCPRNGNQSVLVDFDLRTPLVFDNKYYVNLKEQKGLIQSDQELFSSPNATDTIPLVRAYADGTQTFFNAFVEAMNRMGNITPTTGTQGQIRLNCRVVNSNS 339          
BLAST of CX069987 vs. ExPASy Swiss-Prot
Match: PER32_ARATH (Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=1 SV=3)

HSP 1 Score: 255.373 bits (651), Expect = 3.023e-67
Identity = 128/207 (61.84%), Postives = 155/207 (74.88%), Query Frame = -1
Query:  236 TIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNS 853
            TIAA+++V L+GGPSW VPLGRRDS  A  ALAN NLP PF TL +LK+SF+NVGL+   DLVALSG HTFG+ QCQF   RLY+F+NTG PDPTL+ T+LQ LR  CP+ GN  VL +FD+ TP VFDNKY+ NL+  KGL+Q+DQELFS+P A DT  +V ++      FF  FV +M RMGN+ PLTG QG+IR NCR VN NS
Sbjct:  131 TIAAQQAVNLAGGPSWRVPLGRRDSLQAFFALANTNLPAPFFTLPQLKASFQNVGLDRPSDLVALSGGHTFGKNQCQFIMDRLYNFSNTGLPDPTLNTTYLQTLRGQCPRNGNQTVLVDFDLRTPTVFDNKYYVNLKELKGLIQTDQELFSSPNATDTIPLVREYADGTQKFFNAFVEAMNRMGNITPLTGTQGQIRQNCRVVNSNS 337          
The following BLAST results are available for this feature:
BLAST of CX069987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PER3_ARMRU2.642e-7163.06Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3... [more]
PER22_ARATH3.451e-7164.53Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=... [more]
PER15_IPOBA6.508e-7064.36Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1[more]
PER1A_ARMRU2.473e-6963.29Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE... [more]
PERE5_ARMRU4.219e-6964.04Peroxidase E5 OS=Armoracia rusticana GN=HRPE5 PE=1... [more]
PER1C_ARMRU5.510e-6963.29Peroxidase C1C (Fragment) OS=Armoracia rusticana G... [more]
PER34_ARATH9.398e-6963.29Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=... [more]
PER23_ARATH9.398e-6964.04Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=... [more]
PER33_ARATH2.315e-6761.84Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=... [more]
PER32_ARATH3.023e-6761.84Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_14B03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14B03-C6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069987 ID=CX069987; Name=CX069987; organism=Citrus sinensis; type=EST; length=853bp
AAAAGTTTAATTAATCTATTTGAAAATACATAACATCTTTCAGACAAGAC
CATTAGATTAAACTCAAGTTTGATCGTTAATTTATTTGAAAGTACATAAC
ATGTTTCAGGCAAAACGATCAGATTAAATTTGAGTTTGTTAAGCACAAAA
ACTCTCGCGCATATGCTGCAAGCTAGCTTATTTAGAAAGAGCTGACCAAA
TCACCCTCTGATGATGATGATCTTGTTGCAATATTACTGTTTCCATTGAC
CCTCCTGCAGTTCAATCTAATCTCCCCTTGATTTCCTGTCAGTGGTTTCA
AATTTCCCATTCTTATCATTGAGGTCACAAAGTTTTTAAAGAAAGCATTC
TGGTTCCTCCCAAAGTCCTCGACAATGGCAGCGGTATCGGCACCAGGAGT
CGAAAACAACTCTTGATCACTCTGCAGAAGGCCTTTGCGGCCTCTAAGAT
TGGAGAAGTATTTGTTGTCGAAAACATCAGGTGTCGTGACATCAAAATTA
GCAAGAACGCCGCCGTTTCCACCTTGTGGGCATAGTTTCCTCAGTTGTTG
TAAGAAGGTTGCGTCTAGGGTTGGGTCTGGCTTGCCAGTGTTGTTAAAAT
CGTATAATCTGCCCCTGAAAAATTGGCACTGAGCCCTTCCGAACGTGTGT
GCTCCGGAGAGTGCAACAAGATCAAGCTTGTCATTGAGGCCAACATTTCT
AAAACTAGATTTGAGCTCATCAAGAGTATCAAATGGTCCTGGAAGATTCT
GATTTGCAAGAGCTCTGTTTGCCGTTCTGCTGTCTCTTCTTCCCAATGGA
ACTGCCCATGACGGACCCCCTGACAAAGCAACGGATCGTTCAGCCGCAAT
AGT
back to top