CX069986

Overview
NameCX069986
Unique NameCX069986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069986 vs. ExPASy Swiss-Prot
Match: PAPD5_MOUSE (PAP-associated domain-containing protein 5 OS=Mus musculus GN=Papd5 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.522e-22
Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = 3
Query:  138 LQALSRALLQRGIAKK--IQVIAKARVPIVKFFEKKSGVSFDISFDAQNGPKAAEFIKDALAECPPLRPLCLILKVFLQQRELNEVYSGGIGSFALLTMIMAVLKV 449
            L  L  AL +  +A +  ++V+ KA VPI+K  +  + V  DISF+ QNG +AA+ IKD   + P L  L L+LK FL QR+LNEV++GGIGS++L  M ++ L++
Sbjct:  205 LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQL 310          

HSP 2 Score: 41.5874 bits (96), Expect = 2.522e-22
Identity = 19/38 (50.00%), Postives = 23/38 (60.53%), Query Frame = 1
Query:    1 PKCKPKVFGTFRTGLYLPTSDIDAFAESFGSRL*LWNL 114
            P    ++FG+F+TGLYLPTSDID         L LW L
Sbjct:  171 PSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLPLWTL 208          
BLAST of CX069986 vs. ExPASy Swiss-Prot
Match: PAPD5_HUMAN (PAP-associated domain-containing protein 5 OS=Homo sapiens GN=PAPD5 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.526e-22
Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = 3
Query:  138 LQALSRALLQRGIAKK--IQVIAKARVPIVKFFEKKSGVSFDISFDAQNGPKAAEFIKDALAECPPLRPLCLILKVFLQQRELNEVYSGGIGSFALLTMIMAVLKV 449
            L  L  AL +  +A +  ++V+ KA VPI+K  +  + V  DISF+ QNG +AA+ IKD   + P L  L L+LK FL QR+LNEV++GGIGS++L  M ++ L++
Sbjct:  191 LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQL 296          

HSP 2 Score: 41.5874 bits (96), Expect = 2.526e-22
Identity = 19/38 (50.00%), Postives = 23/38 (60.53%), Query Frame = 1
Query:    1 PKCKPKVFGTFRTGLYLPTSDIDAFAESFGSRL*LWNL 114
            P    ++FG+F+TGLYLPTSDID         L LW L
Sbjct:  157 PSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLPLWTL 194          
BLAST of CX069986 vs. ExPASy Swiss-Prot
Match: TRF5_ASHGO (Poly(A) RNA polymerase protein 1 OS=Ashbya gossypii GN=TRF5 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.591e-21
Identity = 50/118 (42.37%), Postives = 76/118 (64.41%), Query Frame = 3
Query:   96 VVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVKFFEKKSGVSFDISFDAQNGPKAAEFIKDALAECPPLRPLCLILKVFLQQRELNEVYSGGIGSFALLTMIMAVLKV 449
            VV  +SG  +    L +L+  L + G+A ++ VIAKARVPI+KF E  S +  D+SF+  NG +AA+ I+  L + P LR L LI+K FL  R LN+V+ GG+G F+++ +  + LK+
Sbjct:  256 VVNSKSGDKDNKNALYSLASYLKRNGLATQVSVIAKARVPIIKFVEPASQIHIDLSFERTNGVEAAKIIRGWLHDTPGLRELVLIVKQFLHARRLNDVHIGGLGGFSIICLAYSFLKL 373          

HSP 2 Score: 28.8758 bits (63), Expect = 1.591e-21
Identity = 13/28 (46.43%), Postives = 15/28 (53.57%), Query Frame = 1
Query:    1 PKCKPKVFGTFRTGLYLPTSDIDAFAES 84
            P      FG++ T LYLP SDID    S
Sbjct:  232 PDANLHCFGSYATDLYLPGSDIDCVVNS 259          
BLAST of CX069986 vs. ExPASy Swiss-Prot
Match: TRF5_YEAST (Poly(A) RNA polymerase protein 1 OS=Saccharomyces cerevisiae GN=TRF5 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.553e-21
Identity = 43/101 (42.57%), Postives = 69/101 (68.32%), Query Frame = 3
Query:  147 LSRALLQRGIAKKIQVIAKARVPIVKFFEKKSGVSFDISFDAQNGPKAAEFIKDALAECPPLRPLCLILKVFLQQRELNEVYSGGIGSFALLTMIMAVLKV 449
            L+R L  +G+A +++VI K RVPI+KF E +S +  D+SF+  NG +AA+ I++ L + P LR L LI+K FL  R LN V++GG+G F ++ ++ + L +
Sbjct:  254 LARHLKNKGLAIRMEVIVKTRVPIIKFIEPQSQLHIDVSFERTNGLEAAKLIREWLRDSPGLRELVLIIKQFLHSRRLNNVHTGGLGGFTVICLVYSFLNM 354          

HSP 2 Score: 31.187 bits (69), Expect = 4.553e-21
Identity = 14/22 (63.64%), Postives = 15/22 (68.18%), Query Frame = 1
Query:   19 VFGTFRTGLYLPTSDIDAFAES 84
            VFG+F T LYLP SDID    S
Sbjct:  219 VFGSFATDLYLPGSDIDCVVNS 240          
BLAST of CX069986 vs. ExPASy Swiss-Prot
Match: POLS_MOUSE (DNA polymerase sigma OS=Mus musculus GN=Pols PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.728e-21
Identity = 46/106 (43.40%), Postives = 74/106 (69.81%), Query Frame = 3
Query:  138 LQALSRALLQRGIAK--KIQVIAKARVPIVKFFEKKSGVSFDISFDAQNGPKAAEFIKDALAECPPLRPLCLILKVFLQQRELNEVYSGGIGSFALLTMIMAVLKV 449
            LQ L +AL +  +A+   I+V+ KA VPI+K  ++++ V  DISF+ + G +AAEFIK+ + +   L  L L+LK FL QR+LNEV++GGI S++L+ M ++ L++
Sbjct:   61 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQL 166          

HSP 2 Score: 36.5798 bits (83), Expect = 7.728e-21
Identity = 15/23 (65.22%), Postives = 18/23 (78.26%), Query Frame = 1
Query:    1 PKCKPKVFGTFRTGLYLPTSDID 69
            P    ++FG+F TGLYLPTSDID
Sbjct:   27 PTADVQIFGSFSTGLYLPTSDID 49          
BLAST of CX069986 vs. ExPASy Swiss-Prot
Match: POLS_HUMAN (DNA polymerase sigma OS=Homo sapiens GN=POLS PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 7.728e-21
Identity = 46/106 (43.40%), Postives = 74/106 (69.81%), Query Frame = 3
Query:  138 LQALSRALLQRGIAK--KIQVIAKARVPIVKFFEKKSGVSFDISFDAQNGPKAAEFIKDALAECPPLRPLCLILKVFLQQRELNEVYSGGIGSFALLTMIMAVLKV 449
            LQ L +AL +  +A+   I+V+ KA VPI+K  ++++ V  DISF+ + G +AAEFIK+ + +   L  L L+LK FL QR+LNEV++GGI S++L+ M ++ L++
Sbjct:   61 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQL 166          

HSP 2 Score: 36.5798 bits (83), Expect = 7.728e-21
Identity = 15/23 (65.22%), Postives = 18/23 (78.26%), Query Frame = 1
Query:    1 PKCKPKVFGTFRTGLYLPTSDID 69
            P    ++FG+F TGLYLPTSDID
Sbjct:   27 PTADVQIFGSFSTGLYLPTSDID 49          
BLAST of CX069986 vs. ExPASy Swiss-Prot
Match: PAP2_YEAST (Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae GN=PAP2 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.896e-20
Identity = 48/116 (41.38%), Postives = 76/116 (65.52%), Query Frame = 3
Query:   96 VVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVKFFEKKSGVSFDISFDAQNGPKAAEFIKDALAECPPLRPLCLILKVFLQQRELNEVYSGGIGSFALLTMIMAVL 443
            VV  E G       L +L+  L ++ +A +++V+AKARVPI+KF E  SG+  D+SF+  NG +AA+ I++ L + P LR L LI+K FL  R LN V++GG+G F+++ ++ + L
Sbjct:  240 VVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIDVSFERTNGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFL 355          
BLAST of CX069986 vs. ExPASy Swiss-Prot
Match: CID14_SCHPO (Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe GN=cid14 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 5.808e-17
Identity = 38/101 (37.62%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  147 LSRALLQRGIAKKIQVIAKARVPIVKFFEKKSGVSFDISFDAQNGPKAAEFIKDALAECPPLRPLCLILKVFLQQRELNEVYSGGIGSFALLTMIMAVLKV 449
            L+  L +  +A ++QVI  A VPI+KF +  + V  DISF+   G K    +   + + P LRPL +I+K FL  R LNEV+ GG+ S+A++ ++++ L++
Sbjct:  320 LAHHLKKLKLASEVQVITTANVPIIKFVDPLTKVHVDISFNQPGGLKTCLVVNGFMKKYPALRPLVIIIKHFLNMRALNEVFLGGLSSYAIVCLVVSFLQL 420          

HSP 2 Score: 31.9574 bits (71), Expect = 5.808e-17
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 1
Query:   19 VFGTFRTGLYLPTSDID 69
            VFG+F T LYLPTSD+D
Sbjct:  284 VFGSFETKLYLPTSDLD 300          
The following BLAST results are available for this feature:
BLAST of CX069986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PAPD5_MOUSE2.522e-2244.34PAP-associated domain-containing protein 5 OS=Mus ... [more]
PAPD5_HUMAN2.526e-2244.34PAP-associated domain-containing protein 5 OS=Homo... [more]
TRF5_ASHGO1.591e-2142.37Poly(A) RNA polymerase protein 1 OS=Ashbya gossypi... [more]
TRF5_YEAST4.553e-2142.57Poly(A) RNA polymerase protein 1 OS=Saccharomyces ... [more]
POLS_MOUSE7.728e-2143.40DNA polymerase sigma OS=Mus musculus GN=Pols PE=2 ... [more]
POLS_HUMAN7.728e-2143.40DNA polymerase sigma OS=Homo sapiens GN=POLS PE=1 ... [more]
PAP2_YEAST6.896e-2041.38Poly(A) RNA polymerase protein 2 OS=Saccharomyces ... [more]
CID14_SCHPO5.808e-1737.62Poly(A) RNA polymerase cid14 OS=Schizosaccharomyce... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_14B02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14B02-C4-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069986 ID=CX069986; Name=CX069986; organism=Citrus sinensis; type=EST; length=778bp
CCCAAGTGCAAGCCTAAAGTTTTTGGGACCTTCAGAACTGGGCTTTATCT
TCCAACCAGTGATATCGATGCTTTCGCTGAAAGCTTTGGTTCTAGGTTGT
GATTATGGAATCTGGTATCCATAACCCAGCAACTGGTTTGCAAGCTCTTT
CTAGGGCATTATTGCAACGGGGCATTGCCAAAAAGATACAGGTGATCGCG
AAGGCTCGTGTGCCGATTGTTAAATTTTTCGAGAAAAAAAGTGGTGTTTC
ATTTGATATAAGTTTTGATGCACAAAATGGACCAAAAGCAGCTGAGTTTA
TTAAGGATGCATTGGCTGAGTGCCCGCCATTACGTCCATTATGTTTGATC
TTGAAAGTCTTTTTGCAGCAGAGAGAATTGAATGAGGTATATTCTGGTGG
AATTGGTTCCTTTGCTCTCCTTACCATGATAATGGCAGTCTTGAAGGTAA
GTTTATGTTGTATTCTTGGTTTTCACCTCGATAGGCCCTGTAATCTCACG
GTTGGCGTTACCCTATGATATGTTTTTGTCTTTCTATCATCATTGTCTAA
TCAAAGGACAATTTGTAATTATTTTTTAATATTAGTTTAAGATTAAGATT
TGGGAATGAGACCTGATGTGGCTCTGAAAGATATTTATTCCTGGAACTTC
GAGAGCTAGCTAAAGTTTGTTCCTTGCATCTCTTCAGTTATATTTCAATA
CCTGAAACTGCATCAGAGTTCTGCATACTTAACTGCATCCTTCTTTTAGT
AAATTGAAATGAAGTGTAATATGGTTCC
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