CX069983

Overview
NameCX069983
Unique NameCX069983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069983_ssr525 microsatellite CX069983_ssr525:525..548. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6147 contig Csv1_Contig6147:342..1019. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX069983 vs. ExPASy Swiss-Prot
Match: DRM1_ARATH (DNA (cytosine-5)-methyltransferase DRM1 OS=Arabidopsis thaliana GN=DRM1 PE=4 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 3.849e-66
Identity = 120/163 (73.62%), Postives = 143/163 (87.73%), Query Frame = 3 
Query:   15 GFPKNHTRGGGISRTDRYKSLGNSFQVDTVAYHLSVLKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDLVK 503
            GFP++HTRGGGIS TDRYKSLGNSFQVDTVAYHLSVLK ++P+GINVLSLF+GIGG EVALHRL ++M  VVSV+IS+ NRNI+RS+WEQTNQKG L +F DVQ+LD N IE++++ +GGFDLVIGGSPCNNLAG NRH R GL G+ SSLF+DY RIL+ V+
Sbjct:  454 GFPRDHTRGGGISTTDRYKSLGNSFQVDTVAYHLSVLKPLFPNGINVLSLFTGIGGGEVALHRLQIKMNVVVSVEISDANRNILRSFWEQTNQKGILREFKDVQKLDDNTIERLMDEYGGFDLVIGGSPCNNLAGGNRHHRVGLGGEHSSLFFDYCRILEAVR 616
[Close]
BLAST of CX069983 vs. ExPASy Swiss-Prot
Match: DRM2_ARATH (DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana GN=DRM2 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 9.481e-65
Identity = 118/167 (70.66%), Postives = 145/167 (86.83%), Query Frame = 3 
Query:   15 GFPKNHTRGGGISRTDRYKSLGNSFQVDTVAYHLSVLKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDLVKNMMQ 515
            GFPKNHTRGGG+SRT+R+KSLGNSFQVDTVAYHLSVLK ++P GINVLSLF+GIGG EVALHRL ++MK VVSV+IS+VNRNI++ +WEQTNQ G LI+F+D+Q L  + IE ++  +GGFDLVIGGSPCNNLAG NR SR GLEG +SSLF++Y RIL++V+  M+
Sbjct:  458 GFPKNHTRGGGMSRTERFKSLGNSFQVDTVAYHLSVLKPIFPHGINVLSLFTGIGGGEVALHRLQIKMKLVVSVEISKVNRNILKDFWEQTNQTGELIEFSDIQHLTNDTIEGLMEKYGGFDLVIGGSPCNNLAGGNRVSRVGLEGDQSSLFFEYCRILEVVRARMR 624
The following BLAST results are available for this feature:
BLAST of CX069983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DRM1_ARATH3.849e-6673.62DNA (cytosine-5)-methyltransferase DRM1 OS=Arabido... [more]
DRM2_ARATH9.481e-6570.66DNA (cytosine-5)-methyltransferase DRM2 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_14B01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14B01-C2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069983 ID=CX069983; Name=CX069983; organism=Citrus sinensis; type=EST; length=678bp
GGAAATGCTTTNTGGGTTTCCCGAAGAACCACACGAGGGGAGGGGGAATT
AGTAGGACAGATCGATATAAGTCCCTTGGGAACTCATTTCAGGTTGACAC
AGTGGCTTACCACCTGTCAGTCCTAAAAGAAATGTACCCTGATGGCATTA
ATGTCCTTTCTCTTTTCTCTGGGATTGGTGGTGCAGAAGTTGCCTTACAT
CGGCTTGGCGTCCGGATGAAGAATGTTGTTTCCGTTGATATCTCTGAGGT
CAACAGGAACATTGTCCGGAGTTGGTGGGAGCAAACCAACCAGAAGGGGA
CTTTGATTGACTTTGCCGATGTTCAACAGCTTGATGCCAACCGAATAGAG
CAGATGATCAATGCATTTGGTGGATTTGATCTTGTTATCGGTGGGAGTCC
TTGTAACAATCTTGCTGGTAGCAATAGGCACAGCCGTGATGGACTCGAGG
GCAAAGAGTCCTCACTGTTCTATGATTACTTTCGTATTCTGGACTTGGTG
AAGAATATGATGCAGAGAAACTAGTATTATTATTATTATTATTATTATTT
TTGTATTTGTGAATAATTTGCGGATATTAGCTTAGCTGATTAAACCGATC
CTTTAATTATCCTTTGTTTAACATTTTATTGGAAGAGGCATCAGAAGTTG
ATTCCNNANNANAAAAAAAAAAAAAAAA
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