CX069974

Overview
NameCX069974
Unique NameCX069974
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069974_ssr182 microsatellite CX069974_ssr182:182..193. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2833 contig Csv1_Contig2833:49..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069974 vs. ExPASy Swiss-Prot
Match: C19L2_MOUSE (CWF19-like protein 2 OS=Mus musculus GN=Cwf19l2 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.944e-34
Identity = 76/183 (41.53%), Postives = 117/183 (63.93%), Query Frame = 2
Query:  248 GRAD-DEYDFEEGPSRKS--RKNRGANDNKGAERAIA--RCIMTQQERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLETVMGLGQQRRHCLIECIPLPQKIAKQAPVYFKKAIDEAEDEWSQHNAKKLIDTS 781
            G++D D Y  ++    K+  +++ G  +     RAIA  + +  +  +CL+CF++   P+HL+VAI    YL LP +QS+  GHC I+ +QH  A   +D  VW+EI+ F+K L+ MF  +E + +FLET MGL ++  H + ECIPLP+++   AP+YFKKAI E+++EWS +  KKLID S
Sbjct:  620 GKSDEDNYTLDDMFVSKAAEKEHLGKKEESQRRRAIAEHQSLAAKMAKCLYCFDSSQFPKHLIVAIGVKVYLCLPSFQSLTEGHCFIVPLQHHQAATVLDEDVWEEIQMFRKSLVKMFEDKELDCIFLETNMGL-KKHYHMVYECIPLPKEVGDMAPIYFKKAIMESDEEWSMN--KKLIDLS 799          
BLAST of CX069974 vs. ExPASy Swiss-Prot
Match: C19L2_HUMAN (CWF19-like protein 2 OS=Homo sapiens GN=CWF19L2 PE=1 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 4.252e-33
Identity = 70/163 (42.94%), Postives = 105/163 (64.42%), Query Frame = 2
Query:  299 RKNRGANDNKGAERAIA--RCIMTQQERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLETVMGLGQQRRHCLIECIPLPQKIAKQAPVYFKKAIDEAEDEWSQHNAKKLIDTS 781
            R+  G  +    ++AIA  R +  Q E+CL+CF++   P+HL+VAI    YL LP  +S+  GHC I+ +QH  A   +D  +W+EI+ F+K L+ MF  +  + +FLET M + +Q  H + ECIPLP+++   AP+YFKKAI E+++EWS +  KKLID S
Sbjct:  643 RERLGEEEENQRKKAIAEHRSLAAQMEKCLYCFDSSQFPKHLIVAIGVKVYLCLPNVRSLTEGHCLIVPLQHHRAATLLDEDIWEEIQMFRKSLVKMFEDKGLDCIFLETNMSMKKQ-YHMVYECIPLPKEVGDMAPIYFKKAIMESDEEWSMN--KKLIDLS 802          
BLAST of CX069974 vs. ExPASy Swiss-Prot
Match: C19L2_XENTR (CWF19-like protein 2 OS=Xenopus tropicalis GN=cwf19l2 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.158e-30
Identity = 70/178 (39.33%), Postives = 106/178 (59.55%), Query Frame = 2
Query:  260 DEYDFEEGPSRKSRKNRGANDNKGAERAIA----RCIMTQQERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLETVMGLGQQRRHCLIECIPLPQKIAKQAPVYFKKAIDEAEDEWSQHNAKKLIDTS 781
            D Y  ++    K+ K    +  +  ER  A    R +    E+C FCF+N   P+HL+VAI    YL LP   S+  GHC I+ +QH  A+  +D  +++EI+ F+K L+ MF  +  + VFLE+ +   ++R H + ECIPLP+++   AP+YFKKAI E+++EWS +  KKLID S
Sbjct:  663 DYYTLDDMFVTKAAKKEHTDKEEERERMQAMHEHRSLTATMEKCRFCFDNAELPKHLIVAIGTKVYLCLPNHLSLTEGHCLIVPLQHHTASTLLDEDIYNEIQVFRKALVRMFESKGLDCVFLESNI-YARKRLHLVYECIPLPKEVGDMAPIYFKKAIMESDEEWSMN--KKLIDLS 837          
BLAST of CX069974 vs. ExPASy Swiss-Prot
Match: C19L2_DANRE (CWF19-like protein 2 OS=Danio rerio GN=cwf19l2 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.369e-30
Identity = 66/183 (36.07%), Postives = 109/183 (59.56%), Query Frame = 2
Query:  248 GRAD-DEYDFEEG--PSRKSRKNRGANDNKGAERAI--ARCIMTQQERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLETVMGLGQQRRHCLIECIPLPQKIAKQAPVYFKKAIDEAEDEWSQHNAKKLIDTS 781
            GR D D Y  ++    S   ++  G ++ +   +A+   R +  + E+C  CF++   P+HL++A+    YL LP   S+  GHC I+ VQH  A   +D  +W EI+ F++ L+ MF  QE + VFLET M   ++  H + EC+P+P+++   AP+YFKKAI E+++EW+ +  KK++D S
Sbjct:  694 GRTDGDNYTLDDMFVSSAAQKERAGRDEERQRNKAVQETRRLAGRMEKCPHCFDSAELPKHLIIAVGTKVYLCLPNSVSLTEGHCLIVPVQHHTAATGLDEDIWGEIQMFRRALVRMFESQELDCVFLETHMN-PKRHLHMVYECVPMPRELGDMAPIYFKKAIMESDEEWAMN--KKVVDLS 873          
BLAST of CX069974 vs. ExPASy Swiss-Prot
Match: C19L2_DROME (CWF19-like protein 2 homolog OS=Drosophila melanogaster GN=CG9213 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.980e-22
Identity = 59/179 (32.96%), Postives = 95/179 (53.07%), Query Frame = 2
Query:  227 NKQYS--ISGRADDEYDFEEGPSRKSRKNRGANDNKGAERAIA----RCIMTQQERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLETVMGLGQQRRHCLIECIPLPQKIAKQAPVYFKKAIDEAEDEW 745
            N QY+  +S   +   D ++  + K RK   A+D +  E   A      ++   + C  CF++    + L+V++ +  YL LP +  +  GHC + ++QH      +D   W+EI NF+K L  MFA + +++VF E    L  +R H  + CIP+P    + AP YFKKAI+E+E EW
Sbjct:  417 NLQYADIVSKHKNPNDDLDDIFADKVRKQISASDAEKREMQSAIREHEKLVATLDNCERCFDSAKLDKQLLVSLGDKIYLSLPWYMGLQSGHCILTTLQHVPCCTQLDEDAWEEISNFRKALTRMFAARRQDVVFYEIANKL-HRRPHLSVHCIPIPASQGEMAPFYFKKAIEESEQEW 594          
BLAST of CX069974 vs. ExPASy Swiss-Prot
Match: CWF19_SCHPO (Pre-mRNA-splicing factor cwf19 OS=Schizosaccharomyces pombe GN=cwf19 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.317e-21
Identity = 48/136 (35.29%), Postives = 76/136 (55.88%), Query Frame = 2
Query:  371 ERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLETVMGLGQQRRHCLIECIPLPQKIAKQAPVYFKKAIDEAEDEWSQHNAKKLIDT 778
            + C  C     +P   V+++++  Y+ LP    +   HC I+   H + T + D   WDEIRNF KC+ +MF      ++F E      Q+  H  IECIP+ ++I   AP YF++A+  +++EWSQH  +K+IDT
Sbjct:  410 DTCPLCLNYETQPLAPVISLSHRAYVSLPTQPELAKYHCLIVPTGHRINTLSCDEDEWDEIRNFMKCIALMFDSMNLGVIFYENAPS-PQRYMHTAIECIPVSKRILSLAPAYFREALSTSDEEWSQH--RKIIDT 542          
BLAST of CX069974 vs. ExPASy Swiss-Prot
Match: C19L2_CAEEL (CWF19-like protein 2 homolog OS=Caenorhabditis elegans GN=B0361.2/B0361.1 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 5.391e-20
Identity = 56/179 (31.28%), Postives = 93/179 (51.96%), Query Frame = 2
Query:  251 RADDEYDFEEGPSRKSRKNRGANDNKGAERAIAR---CIMTQQERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLETVMGLGQQRRHCLIECIPLPQKIAKQAPVYFKKAIDEAEDEWSQHNAKKLIDT 778
            R DDE   +    +K +K     D K  E+   +    I    + C  C ++    +H ++A+   TYL + +W  +   H  I+  QH  +T  +D +VWDE+R ++K L+ ++  Q ++ +F E    +     H  IEC+P+ Q+I   A +YFKKAI+E E E+  +  KKLI+T
Sbjct:  194 RHDDESVDDIAEMQKGKKKSDEKDKKRKEKESIKEHKRIERSFDDCSRCIDSSRLKKHNIIAVGINTYLAVVEWDGLDDEHLIIVPTQHCSSTIQLDENVWDEMRLWRKGLVAVWKSQNRDCIFFEMSRHV-DSNPHVFIECVPVEQEIGDMASIYFKKAINECEGEYMDN--KKLIET 369          
The following BLAST results are available for this feature:
BLAST of CX069974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
C19L2_MOUSE2.944e-3441.53CWF19-like protein 2 OS=Mus musculus GN=Cwf19l2 PE... [more]
C19L2_HUMAN4.252e-3342.94CWF19-like protein 2 OS=Homo sapiens GN=CWF19L2 PE... [more]
C19L2_XENTR1.158e-3039.33CWF19-like protein 2 OS=Xenopus tropicalis GN=cwf1... [more]
C19L2_DANRE3.369e-3036.07CWF19-like protein 2 OS=Danio rerio GN=cwf19l2 PE=... [more]
C19L2_DROME1.980e-2232.96CWF19-like protein 2 homolog OS=Drosophila melanog... [more]
CWF19_SCHPO8.317e-2135.29Pre-mRNA-splicing factor cwf19 OS=Schizosaccharomy... [more]
C19L2_CAEEL5.391e-2031.28CWF19-like protein 2 homolog OS=Caenorhabditis ele... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_14A07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14A07-A14-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069974 ID=CX069974; Name=CX069974; organism=Citrus sinensis; type=EST; length=786bp
CTCGAAGAGCTGTCCTGTCTTAACTCAAATTGGGAACAGAACAGCCTCTG
GTCTTCAGTTTCAGCAAGAAGTTGAGAAAATGAAGGCAAAGCAGGGTGCG
GCTGATAATTCTACTAAACATCAAGATGTTGGAAGCTTGGGCAGGCATGT
TATTTATGATTTGTATGTTCGAAAAAGGAAGGATGATGATGATGCTGATA
GGAATCTAGCCCAAAAGATAATGCATAATAAACAATACAGTATATCTGGT
CGGGCCGATGATGAATATGATTTTGAAGAAGGTCCAAGTCGAAAGTCCCG
GAAGAATAGAGGAGCAAATGATAATAAGGGTGCTGAAAGAGCTATTGCGA
GATGTATCATGACTCAACAAGAGCGCTGCCTGTTTTGCTTTGAGAATCCA
AACCGGCCAAGACACCTTGTTGTGGCAATAGCAAATTTTACTTATTTGGT
GTTGCCACAGTGGCAGTCTGTCGTGCCTGGTCATTGCTGCATCTTGTCAG
TGCAGCATGAGTTGGCGACTAGAACCGTTGACAGTCATGTGTGGGATGAA
ATTCGTAACTTCAAGAAATGCCTTATCATGATGTTTGCCAAGCAAGAGAA
GGAATTAGTGTTTCTCGAAACAGTGATGGGTTTGGGACAACAGCGTCGCC
ATTGTTTGATTGAGTGCATTCCGTTGCCCCAAAAAATTGCGAAACAGGCC
CCTGTCTATTTCAAGAAGGCAATTGATGAAGCTGAAGATGAATGGAGCCA
GCACAATGCAAAGAAGTTAATTGATACAAGTGTGAA
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