CX069973

Overview
NameCX069973
Unique NameCX069973
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069973 vs. ExPASy Swiss-Prot
Match: C19L2_MOUSE (CWF19-like protein 2 OS=Mus musculus GN=Cwf19l2 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.213e-53
Identity = 103/221 (46.61%), Postives = 147/221 (66.52%), Query Frame = -2
Query:  174 RCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLETVMGLGQQRRHCLIECIPLPQKIAKQAPVYFKKAIDEAEDEWSQHNAKKLIDTSVKGLCGSIPKDFPYFHVEFGLNKGFVHVIDDETQFKSSFGLNVIRGMLRLPEEDMYRHRRHESVETQKQAVATFAQDWEPFDWTK 836
            +CL+CF++   P+HL+VAI    YL LP +QS+  GHC I+ +QH  A   +D  VW+EI+ F+K L+ MF  +E + +FLET MGL ++  H + ECIPLP+++   AP+YFKKAI E+++EWS +  KKLID S K +  S+P+  PYF V+FGL  GF H+I+D+ +F   FG  +I GML L E  ++R    ES E Q++    FAQ W+P+D TK
Sbjct:  667 KCLYCFDSSQFPKHLIVAIGVKVYLCLPSFQSLTEGHCFIVPLQHHQAATVLDEDVWEEIQMFRKSLVKMFEDKELDCIFLETNMGL-KKHYHMVYECIPLPKEVGDMAPIYFKKAIMESDEEWSMN--KKLIDLSSKDIRKSVPRGLPYFAVDFGLQGGFAHIIEDQYRFPHYFGKEIIGGMLDL-EPRLWRKGIRESFEDQRKKSLQFAQWWKPYDITK 883          
BLAST of CX069973 vs. ExPASy Swiss-Prot
Match: C19L2_HUMAN (CWF19-like protein 2 OS=Homo sapiens GN=CWF19L2 PE=1 SV=3)

HSP 1 Score: 206.453 bits (524), Expect = 1.601e-52
Identity = 101/224 (45.09%), Postives = 148/224 (66.07%), Query Frame = -2
Query:  174 QQERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLETVMGLGQQRRHCLIECIPLPQKIAKQAPVYFKKAIDEAEDEWSQHNAKKLIDTSVKGLCGSIPKDFPYFHVEFGLNKGFVHVIDDETQFKSSFGLNVIRGMLRLPEEDMYRHRRHESVETQKQAVATFAQDWEPFDWTK 845
            Q E+CL+CF++   P+HL+VAI    YL LP  +S+  GHC I+ +QH  A   +D  +W+EI+ F+K L+ MF  +  + +FLET M + +Q  H + ECIPLP+++   AP+YFKKAI E+++EWS +  KKLID S K +  S+P+  PYF V+FGL+ GF HVI+D+ +F   FG  +I GML + E  ++R    ES E Q++    FAQ W+P+D+TK
Sbjct:  667 QMEKCLYCFDSSQFPKHLIVAIGVKVYLCLPNVRSLTEGHCLIVPLQHHRAATLLDEDIWEEIQMFRKSLVKMFEDKGLDCIFLETNMSMKKQ-YHMVYECIPLPKEVGDMAPIYFKKAIMESDEEWSMN--KKLIDLSSKDIRKSVPRGLPYFSVDFGLHGGFAHVIEDQHKFPHYFGKEIIGGMLDI-EPRLWRKGIRESFEDQRKKALQFAQWWKPYDFTK 886          
BLAST of CX069973 vs. ExPASy Swiss-Prot
Match: C19L2_XENTR (CWF19-like protein 2 OS=Xenopus tropicalis GN=cwf19l2 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.038e-51
Identity = 102/223 (45.74%), Postives = 146/223 (65.47%), Query Frame = -2
Query:  171 ERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLETVMGLGQQRRHCLIECIPLPQKIAKQAPVYFKKAIDEAEDEWSQHNAKKLIDTSVKGLCGSIPKDFPYFHVEFGLNKGFVHVIDDETQFKSSFGLNVIRGMLRLPEEDMYRHRRHESVETQKQAVATFAQDWEPFDWTKQ 839
            E+C FCF+N   P+HL+VAI    YL LP   S+  GHC I+ +QH  A+  +D  +++EI+ F+K L+ MF  +  + VFLE+ +   ++R H + ECIPLP+++   AP+YFKKAI E+++EWS +  KKLID S K +  ++PK  PYF V+FGL  G+ HVI+DE +F S FG  +I GML L E  ++R    E  E Q++ V  FAQ W+PFD TK+
Sbjct:  704 EKCRFCFDNAELPKHLIVAIGTKVYLCLPNHLSLTEGHCLIVPLQHHTASTLLDEDIYNEIQVFRKALVRMFESKGLDCVFLESNI-YARKRLHLVYECIPLPKEVGDMAPIYFKKAIMESDEEWSMN--KKLIDLSTKDIRRAVPKGLPYFSVDFGLQGGYAHVIEDEHKFPSYFGKEIIGGMLDL-EPRIWRKAVRERFEDQRKKVLEFAQWWKPFDVTKE 922          
BLAST of CX069973 vs. ExPASy Swiss-Prot
Match: C19L2_DANRE (CWF19-like protein 2 OS=Danio rerio GN=cwf19l2 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.832e-48
Identity = 92/224 (41.07%), Postives = 142/224 (63.39%), Query Frame = -2
Query:  174 QQERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLETVMGLGQQRRHCLIECIPLPQKIAKQAPVYFKKAIDEAEDEWSQHNAKKLIDTSVKGLCGSIPKDFPYFHVEFGLNKGFVHVIDDETQFKSSFGLNVIRGMLRLPEEDMYRHRRHESVETQKQAVATFAQDWEPFDWTK 845
            + E+C  CF++   P+HL++A+    YL LP   S+  GHC I+ VQH  A   +D  +W EI+ F++ L+ MF  QE + VFLET M   ++  H + EC+P+P+++   AP+YFKKAI E+++EW+ +  KK++D S + +  ++P+  PYF V+FGL  GF HVI++E +F   FG  ++ GML L E   +R    E+ + Q++ V  FAQ W+PFD TK
Sbjct:  738 RMEKCPHCFDSAELPKHLIIAVGTKVYLCLPNSVSLTEGHCLIVPVQHHTAATGLDEDIWGEIQMFRRALVRMFESQELDCVFLETHMN-PKRHLHMVYECVPMPRELGDMAPIYFKKAIMESDEEWAMN--KKVVDLSKRDIRQAVPRGLPYFSVDFGLQGGFAHVIENEQKFPHYFGKEILGGMLDL-EPRRWRKPIRENFDDQRKKVLKFAQWWKPFDCTK 957          
BLAST of CX069973 vs. ExPASy Swiss-Prot
Match: C19L2_CAEEL (CWF19-like protein 2 homolog OS=Caenorhabditis elegans GN=B0361.2/B0361.1 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 2.030e-39
Identity = 85/223 (38.12%), Postives = 128/223 (57.40%), Query Frame = -2
Query:  165 CLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLETVMGLGQQRRHCLIECIPLPQKIAKQAPVYFKKAIDEAEDEWSQHNAKKLIDTSVKGLCGSIPKDFPYFHVEFGLNKGFVHVIDDETQFKSSFGLNVIRGMLRLPEEDMYRHRRHESVETQKQAVATFAQDWEPFDWTKQLE 833
            C  C ++    +H ++A+   TYL + +W  +   H  I+  QH  +T  +D +VWDE+R ++K L+ ++  Q ++ +F E    +     H  IEC+P+ Q+I   A +YFKKAI+E E E+  +  KKLI+T  K L   IPK F YF V+FGL+ GF HVI+    F S+F   +I GML LP +  +R R  + +  QK     F + WEP DWTK+L+
Sbjct:  239 CSRCIDSSRLKKHNIIAVGINTYLAVVEWDGLDDEHLIIVPTQHCSSTIQLDENVWDEMRLWRKGLVAVWKSQNRDCIFFEMSRHV-DSNPHVFIECVPVEQEIGDMASIYFKKAINECEGEYMDN--KKLIET--KDLRRQIPKGFSYFAVDFGLSNGFAHVIESHDHFPSTFATEIIAGMLDLPPK-KWRKRETDEMSKQKSRAENFKKLWEPVDWTKRLK 455          
BLAST of CX069973 vs. ExPASy Swiss-Prot
Match: C19L2_DROME (CWF19-like protein 2 homolog OS=Drosophila melanogaster GN=CG9213 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.718e-38
Identity = 83/222 (37.39%), Postives = 129/222 (58.11%), Query Frame = -2
Query:  174 ERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLETVMGLGQQRRHCLIECIPLPQKIAKQAPVYFKKAIDEAEDEWSQHNAKKLIDTSVKGLCGSIPKDFPYFHVEFGLNKGFVHVIDDETQFKSSFGLNVIRGMLRLPEEDMYRHRRHESVETQKQAVATFAQDWEPFDWTK 839
            + C  CF++    + L+V++ +  YL LP +  +  GHC + ++QH      +D   W+EI NF+K L  MFA + +++VF E    L  +R H  + CIP+P    + AP YFKKAI+E+E EW  +  K+L+    K L  +IPK  PY  V FG++ GF HVI+DE +F ++F   ++ GML L   + +R  R E+    K  V +FA++W+ FD T+
Sbjct:  471 DNCERCFDSAKLDKQLLVSLGDKIYLSLPWYMGLQSGHCILTTLQHVPCCTQLDEDAWEEISNFRKALTRMFAARRQDVVFYEIANKL-HRRPHLSVHCIPIPASQGEMAPFYFKKAIEESEQEWCIN--KQLVSLRQKSLRAAIPKGLPYVWVHFGMDSGFAHVIEDEDRFPANFAQEILGGMLEL-NPNAWRKPRKEANPIGK--VKSFAENWKKFDCTQ 686          
BLAST of CX069973 vs. ExPASy Swiss-Prot
Match: CWF19_SCHPO (Pre-mRNA-splicing factor cwf19 OS=Schizosaccharomyces pombe GN=cwf19 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.541e-29
Identity = 77/237 (32.49%), Postives = 119/237 (50.21%), Query Frame = -2
Query:  168 ERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLETVMGLGQQRRHCLIECIPLPQKIAKQAPVYFKKAIDEAEDEWSQHNAKKLIDTSVKGLCGS-----------IPKDFPYFHVEFGLNKGFVHVIDDETQF--KSSFGLNVIRGMLRLPEEDMYRHRRHESVETQKQAVATFAQDWEPFDWTKQL 839
            + C  C     +P   V+++++  Y+ LP    +   HC I+   H + T + D   WDEIRNF KC+ +MF      ++F E      Q+  H  IECIP+ ++I   AP YF++A+  +++EWSQH  +K+IDT    L GS           + K+  YFHV F ++ G+ HV++DE  +         V   ML LP E + R       +  ++ +  F   +E FDWTK L
Sbjct:  410 DTCPLCLNYETQPLAPVISLSHRAYVSLPTQPELAKYHCLIVPTGHRINTLSCDEDEWDEIRNFMKCIALMFDSMNLGVIFYENAPS-PQRYMHTAIECIPVSKRILSLAPAYFREALSTSDEEWSQH--RKIIDT----LEGSKKYGKWAFRKMMVKELGYFHVWFSIDGGYGHVVEDEKAWGRHDQVPRQVFASMLNLPPEVIRRKGSWTGKKDPREDM--FRSRFEKFDWTKGL 637          
BLAST of CX069973 vs. ExPASy Swiss-Prot
Match: C3H59_ORYSJ (Zinc finger CCCH domain-containing protein 59 OS=Oryza sativa subsp. japonica GN=Os09g0364000 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.487e-15
Identity = 58/220 (26.36%), Postives = 97/220 (44.09%), Query Frame = -2
Query:  183 QERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLETVMGLGQQRRHCLIECIPLPQKIAKQAPVYFKKAIDEAEDEWSQHNAKKLIDTSVKGLCGSIPKDFPYFHVEFGLNKGFVHVIDDETQFKSSFGLNVIRGMLRLPEEDMYRHRRHESVETQKQAVATFAQDWEPFD 842
            +  C FC  +P+   HLV++I    Y  L +   +VP H  ++ V+H  +T  +      E+  +K  L   F KQ K  ++ E V    QQ RH  ++ +P+P   A      F  A      E+S  N     + + + L          F+VE       +H++D   +F + FG  V+ G+L + +   +R+ +  S E + Q V  F Q +  FD
Sbjct:  396 ESSCWFCLSSPDVESHLVISIGEGYYCALAKGP-LVPNHVLVIPVEHCSSTLKMPVEAEAELGRYKDALAKYFEKQGKIAIYFEWV---SQQSRHANLQAVPVPLSKASSVKKIFHLAAQRLGFEFSVVNPDGDANRARELLRSECDSKSSLFYVELPEGSVLLHLVDSNEKFPAQFGREVLAGLLSMADRADWRNCK-VSKEEEIQMVDDFKQGFREFD 610          
BLAST of CX069973 vs. ExPASy Swiss-Prot
Match: C3H64_ARATH (Zinc finger CCCH domain-containing protein 64 OS=Arabidopsis thaliana GN=At5g56900 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.608e-12
Identity = 56/223 (25.11%), Postives = 100/223 (44.84%), Query Frame = -2
Query:  183 QQERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLETVMGLGQQRRHCLIECIPLPQKIAKQAPVYFKKAIDEAEDEWSQHNAKKLIDTSV--KGLCGSIPKDFPYFHVEFGLNKGFVHVIDDETQFKSSFGLNVIRGMLRLPEEDMYRHRRHESVETQKQAVATFAQDWEPFD 845
            + + C FC  +P+   HL+V++    Y  LP+  S+V  H  I+ ++H   T  +   V  E+  ++  L   +  Q  + VF E V    ++  H  ++ +P+P   A+  P  F  A   AE    +   KK  D++   K L          F+VE        H +++   F + FG  V+ G+L++P+   +R+ +    E  K A   F + ++ FD
Sbjct:  379 RSKECWFCLSSPSVESHLIVSVGESFYCALPKG-SLVEDHILIIPIEHLPNTLVLSPEVESELSRYQNGLRNCYKSQGNDAVFFELV---SKRVSHANLQVVPVPSSRARLLPNIFSLA---AEKLGFKLVTKKFNDSTDGRKYLQKEYNAALGLFYVELPDGTVLSHTLEENEVFPAQFGREVLAGLLKIPDRADWRNCKISQEEEAKLA-EDFKKQFQEFD 593          
The following BLAST results are available for this feature:
BLAST of CX069973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
C19L2_MOUSE4.213e-5346.61CWF19-like protein 2 OS=Mus musculus GN=Cwf19l2 PE... [more]
C19L2_HUMAN1.601e-5245.09CWF19-like protein 2 OS=Homo sapiens GN=CWF19L2 PE... [more]
C19L2_XENTR1.038e-5145.74CWF19-like protein 2 OS=Xenopus tropicalis GN=cwf1... [more]
C19L2_DANRE1.832e-4841.07CWF19-like protein 2 OS=Danio rerio GN=cwf19l2 PE=... [more]
C19L2_CAEEL2.030e-3938.12CWF19-like protein 2 homolog OS=Caenorhabditis ele... [more]
C19L2_DROME1.718e-3837.39CWF19-like protein 2 homolog OS=Drosophila melanog... [more]
CWF19_SCHPO5.541e-2932.49Pre-mRNA-splicing factor cwf19 OS=Schizosaccharomy... [more]
C3H59_ORYSJ3.487e-1526.36Zinc finger CCCH domain-containing protein 59 OS=O... [more]
C3H64_ARATH3.608e-1225.11Zinc finger CCCH domain-containing protein 64 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_14A07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14A07-A14-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069973 ID=CX069973; Name=CX069973; organism=Citrus sinensis; type=EST; length=852bp
TTTTTTAGAGATATAAAATTATCAATATTAATGATGAGAAAATAAAATTA
ACCATACCCAGGACAAAAATTTGATGACATATCACTAGGATTAAAAAACT
ATGTACAACACTATAAATATAACTGAAGTCCTGAATTGCTTTAGACCCAC
TGCACAGTTTTCTATTCAAGTTGTTTTGTCCAGTCAAACGGTTCCCAGTC
CTGCGCAAAAGTTGCAACCGCTTGCTTTTGTGTCTCCACAGATTCATGCC
TCCTATGACGGTACATGTCTTCCTCAGGAAGGCGAAGCATGCCTCTTATG
ACGTTTAGTCCGAAGCTGCTTTTAAACTGTGTTTCATCATCAATTACATG
GACGAAACCCTTATTTAGACCAAACTCAACGTGGAAGTAAGGAAAGTCCT
TTGGAATTGAACCACACAAGCCCTTCACACTTGTATCAATTAACTTCTTT
GCATTGTGCTGGCTCCATTCATCTTCAGCTTCATCAATTGCCTTCTTGAA
ATAGACAGGGGCCTGTTTCGCAATTTTTTGGGGCAACGGAATGCACTCAA
TCAAACAATGGCGACGCTGTTGTCCCAAACCCATCACTGTTTCGAGAAAC
ACTAATTCCTTCTCTTGCTTGGCAAACATCATGATAAGGCATTTCTTGAA
GTTACGAATTTCATCCCACACATGACTGTCAACGGTTCTAGTCGCCAACT
CATGCTGCACTGACAAGATGCAGCAATGACCAGGCACGACAGACTGCCAC
TGTGGCAACACCAAATAAGTAAAATTTGCTATTGCCACAACAAGGTGTCT
TGGCCGGTTTGGATTCTCAAAGCAAAACAGGCAGCGCTCTTGTTGAGTCA
TG
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