CX069971

Overview
NameCX069971
Unique NameCX069971
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2284 contig Csv1_Contig2284:7..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069971 vs. ExPASy Swiss-Prot
Match: COPE1_ARATH (Coatomer subunit epsilon-1 OS=Arabidopsis thaliana GN=At1g30630 PE=2 SV=1)

HSP 1 Score: 361.303 bits (926), Expect = 3.718e-99
Identity = 176/219 (80.37%), Postives = 199/219 (90.87%), Query Frame = -3
Query:  167 VKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 823
            VKLLA+YLSSP+NKESTISSL+EWL+DP +G+NA +RLIAG IFMHEEDYNEALKHT++GGTM+LHALNVQIF+KMHRSD+AE+QLR MQQIDEDHTLTQLA+AWLNLAVGGSKIQEAYLIFQDFSEKYPMT LILNGKAVCCMHMGNF+EAE            DPETLANLVVCSLH GKS+SRYLNQLKL+HP+H+LVKRA+S +++FERALQS A
Sbjct:   74 VKLLAMYLSSPENKESTISSLREWLADPTVGNNAIIRLIAGTIFMHEEDYNEALKHTHSGGTMDLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFQDFSEKYPMTSLILNGKAVCCMHMGNFEEAETLLLEALNKDAKDPETLANLVVCSLHVGKSSSRYLNQLKLSHPEHVLVKRAASAEDNFERALQSFA 292          
BLAST of CX069971 vs. ExPASy Swiss-Prot
Match: COPE2_ARATH (Coatomer subunit epsilon-2 OS=Arabidopsis thaliana GN=At2g34840 PE=2 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 7.256e-95
Identity = 172/219 (78.54%), Postives = 195/219 (89.04%), Query Frame = -3
Query:  167 VKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 823
            VKLLA+YLS+P NKESTISSLKEWL+D  IG+N TLRLIAGIIFMHEEDYNE LKHT+AGGTM+L+ALNVQIF+KMHR++YAE+QLR MQQIDEDHTLTQLA+AWLNLAVGGSKIQEAYLIF+DFSEKYPMT LILNGKAVCCM MGNFDEAE            DPETLANLVVCSLH GKS+SR+L+QLKL+HP+H+LVKR SS +++FERA+Q VA
Sbjct:   75 VKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYNETLKHTHAGGTMDLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFEDFSEKYPMTCLILNGKAVCCMQMGNFDEAETLLLEALNKDAKDPETLANLVVCSLHVGKSSSRHLSQLKLSHPEHILVKRVSSAEDNFERAVQLVA 293          
BLAST of CX069971 vs. ExPASy Swiss-Prot
Match: COPE1_ORYSJ (Coatomer subunit epsilon-1 OS=Oryza sativa subsp. japonica GN=COPE1 PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 5.750e-92
Identity = 166/219 (75.80%), Postives = 193/219 (88.13%), Query Frame = -3
Query:  167 VKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 823
            VKLLALYLS   +KES I SLKEWLSD A+GSN  LRLIAGIIFMHE+DY EALKHT++GGT++LHALNVQIF+KMHRSDYAE+QL+ MQQIDEDHTLTQLANAWL++AVGGSKI+EAYLIFQDF+EKYPMTG++LNGKAVCCMHMG+FDEAE            DPETLANL+VC+LH GK +SRYL+QLKL+HPDH+LVKRA S +++FERALQ+VA
Sbjct:   71 VKLLALYLSG--DKESAIVSLKEWLSDSAVGSNPVLRLIAGIIFMHEQDYTEALKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQLANAWLDIAVGGSKIREAYLIFQDFAEKYPMTGMVLNGKAVCCMHMGSFDEAETLLLEALNKDAKDPETLANLIVCNLHLGKPSSRYLSQLKLSHPDHVLVKRAVSAEDNFERALQAVA 287          
BLAST of CX069971 vs. ExPASy Swiss-Prot
Match: COPE2_ORYSI (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. indica GN=H0413E07.10 PE=3 SV=2)

HSP 1 Score: 294.664 bits (753), Expect = 4.274e-79
Identity = 150/220 (68.18%), Postives = 176/220 (80.00%), Query Frame = -3
Query:  167 VKLLALYLSS-PDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 823
            V+LLA+YLS     KES I  L E L+D A+GSN  LRL+AG + MHE DY  ALKHTN+GGTMEL A+NVQI L+MHRSD+AE+QLR MQQ+DEDHTLTQLANAW++L +GGSKIQEA+LIFQD SEKYP T LILNGKA+C MHMGNF++AEG           D ETLANLVVCSL+ GKS SRYLNQLKL HPDHMLVKR SS ++SF+RA Q+++
Sbjct:   78 VRLLAVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERDYAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLVMGGSKIQEAHLIFQDLSEKYPATCLILNGKALCLMHMGNFEDAEGLLLESLNKDAKDAETLANLVVCSLNLGKSASRYLNQLKLAHPDHMLVKRMSSAEDSFDRACQAIS 297          
BLAST of CX069971 vs. ExPASy Swiss-Prot
Match: COPE2_ORYSJ (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. japonica GN=Os04g0644700 PE=3 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.244e-78
Identity = 149/220 (67.73%), Postives = 175/220 (79.55%), Query Frame = -3
Query:  167 VKLLALYLSS-PDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKSTSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 823
            V+LL +YLS     KES I  L E L+D A+GSN  LRL+AG + MHE DY  ALKHTN+GGTMEL A+NVQI L+MHRSD+AE+QLR MQQ+DEDHTLTQLANAW++L +GGSKIQEA+LIFQD SEKYP T LILNGKA+C MHMGNF++AEG           D ETLANLVVCSL+ GKS SRYLNQLKL HPDHMLVKR SS ++SF+RA Q+++
Sbjct:   78 VRLLTVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERDYAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLVMGGSKIQEAHLIFQDLSEKYPATCLILNGKALCLMHMGNFEDAEGLLLESLNKDAKDAETLANLVVCSLNLGKSASRYLNQLKLAHPDHMLVKRMSSAEDSFDRACQAIS 297          
BLAST of CX069971 vs. ExPASy Swiss-Prot
Match: COPE_CHICK (Coatomer subunit epsilon OS=Gallus gallus GN=COPE PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.537e-41
Identity = 88/222 (39.64%), Postives = 135/222 (60.81%), Query Frame = -3
Query:  167 VKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 823
            V++ A YLS+   +++ ++ L + ++     +N T  L+A  I+ H+++ + AL+  + G ++E  A+ +QI LK+ R D A ++L+ MQ+ DED TLTQLA AW+NLA+GG K+Q+AY IFQ+ ++K   T L+LNG+A C M  G +D+AEG            PETL N VV S H GK    T+RYL+QLK  H +H  +K   + +  F+R     A
Sbjct:   84 VRMFAEYLSNESQRDAIVADLDKKMAKSVDVANTTFLLMAASIYFHDKNPDAALRTLHQGESLECMAMMIQILLKLDRLDLARKELKKMQEQDEDATLTQLATAWVNLAIGGEKLQDAYYIFQEMADKCSSTLLLLNGQAACYMAQGKWDDAEGVLQEALDKDSGHPETLINFVVLSQHLGKPPEVTNRYLSQLKDAHKNHPFIKEYQAKENDFDRLAMQYA 305          
BLAST of CX069971 vs. ExPASy Swiss-Prot
Match: COPE_PONAB (Coatomer subunit epsilon OS=Pongo abelii GN=COPE PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.293e-40
Identity = 88/222 (39.64%), Postives = 133/222 (59.91%), Query Frame = -3
Query:  167 VKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 823
            V++ A YL+    ++S ++ L   +S     +N T  L+A  I++H+++ + AL+  + G ++E  A+ VQI LK+ R D A ++L+ MQ +DED TLTQLA AW++LA GG K+Q+AY IFQ+ ++K   T L+LNG+A C M  G ++ AEG            PETL NL+V S H GK    T+RYL+QLK  H  H  +K   + +  F+R +   A
Sbjct:   84 VRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYA 305          
BLAST of CX069971 vs. ExPASy Swiss-Prot
Match: COPE_HUMAN (Coatomer subunit epsilon OS=Homo sapiens GN=COPE PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 2.293e-40
Identity = 88/222 (39.64%), Postives = 133/222 (59.91%), Query Frame = -3
Query:  167 VKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 823
            V++ A YL+    ++S ++ L   +S     +N T  L+A  I++H+++ + AL+  + G ++E  A+ VQI LK+ R D A ++L+ MQ +DED TLTQLA AW++LA GG K+Q+AY IFQ+ ++K   T L+LNG+A C M  G ++ AEG            PETL NL+V S H GK    T+RYL+QLK  H  H  +K   + +  F+R +   A
Sbjct:   84 VRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYA 305          
BLAST of CX069971 vs. ExPASy Swiss-Prot
Match: COPE_MOUSE (Coatomer subunit epsilon OS=Mus musculus GN=Cope PE=2 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 6.671e-40
Identity = 90/222 (40.54%), Postives = 130/222 (58.56%), Query Frame = -3
Query:  167 VKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 823
            V++ A YL+S + ++S +  L   +S     +N T  L+A  I+ H+++ + AL+  + G  +E  A+ +QI LK+ R D A ++L+ MQ  DED TLTQLA AW+NLAVGG K+QEAY IFQ+ ++K   T L+LNG+A C    G ++ AEG            PETL NL+V S H GK    T+RYL+QLK  H  H  +K   + +  F+R     A
Sbjct:   84 VRMFAEYLASENQRDSIVLELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAALRTLHQGDGLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQEAYYIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQHLGKPPEVTNRYLSQLKDAHRAHPFIKEYQAKENDFDRLAMQYA 305          
BLAST of CX069971 vs. ExPASy Swiss-Prot
Match: COPE_CRIGR (Coatomer subunit epsilon OS=Cricetulus griseus GN=COPE PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.941e-39
Identity = 89/220 (40.45%), Postives = 133/220 (60.45%), Query Frame = -3
Query:  176 VKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFER-ALQ 823
            V++ A YL++ + +++ +  L   +S     +N T  L+A  ++ H+++ + AL+  + G ++E  A+ +QI LK+ R D A ++L+ MQ  DED TLTQLA AW+NLAVGG K+QEAY IFQ+ ++K   T L+LNG+A C    G ++ AEG            PETL NL+V S H GK    T+RYL+QLK  H  H  +K   + +  F+R ALQ
Sbjct:   84 VRMFADYLATENRRDAIVVELDREMSRSVDVTNTTFLLMAASVYFHDQNPDAALRTLHQGDSLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQEAYYIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQHLGKPPEVTNRYLSQLKDAHRTHPFIKEYQAKENDFDRLALQ 303          
The following BLAST results are available for this feature:
BLAST of CX069971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COPE1_ARATH3.718e-9980.37Coatomer subunit epsilon-1 OS=Arabidopsis thaliana... [more]
COPE2_ARATH7.256e-9578.54Coatomer subunit epsilon-2 OS=Arabidopsis thaliana... [more]
COPE1_ORYSJ5.750e-9275.80Coatomer subunit epsilon-1 OS=Oryza sativa subsp. ... [more]
COPE2_ORYSI4.274e-7968.18Coatomer subunit epsilon-2 OS=Oryza sativa subsp. ... [more]
COPE2_ORYSJ1.244e-7867.73Coatomer subunit epsilon-2 OS=Oryza sativa subsp. ... [more]
COPE_CHICK3.537e-4139.64Coatomer subunit epsilon OS=Gallus gallus GN=COPE ... [more]
COPE_PONAB2.293e-4039.64Coatomer subunit epsilon OS=Pongo abelii GN=COPE P... [more]
COPE_HUMAN2.293e-4039.64Coatomer subunit epsilon OS=Homo sapiens GN=COPE P... [more]
COPE_MOUSE6.671e-4040.54Coatomer subunit epsilon OS=Mus musculus GN=Cope P... [more]
COPE_CRIGR1.941e-3940.45Coatomer subunit epsilon OS=Cricetulus griseus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14A06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14A06-A12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069971 ID=CX069971; Name=CX069971; organism=Citrus sinensis; type=EST; length=825bp
TTCTTGAAATATTTAACATATACATACGTATCTTTATCCAAGAATTCAAA
AAGGGTAAATACCCATCTCTATGCTAACAAACACAATCTTTCAAATCAAT
CATATACTTCTCTTGTAGGTTACAAAAATCATTCACCTCTTGGCCCCAAA
ATGACTCTAGTTTTCAGGCAACAGATTGAAGTGCTCTTTCAAAGCTCTCA
TCTCCGGATGAAGCACGCTTGACAAGCATGTGGTCTGGGTGTGTAAGCTT
CAACTGGTTGAGGTAACGTGAAGTTGATTTTCCTTGGTGAAGACTGCATA
CAACCAGGTTGGCAAGAGTTTCTGGATCTTTAGCATCCTTGTTGAGTGCA
TCAAGCAACAATCCTTCAGCTTCATCAAAGTTCCCCATATGCATGCAGCA
AACAGCCTTTCCATTCAAGATCAACCCTGTCATTGGATACTTCTCAGAGA
AATCTTGAAAGATGAGATATGCTTCCTGTATCTTGGAACCACCCACTGCC
AAATTCAACCAAGCATTTGCAAGTTGAGTTAGGGTGTGGTCCTCATCAAT
CTGTTGCATGGCCCTCAGCTGTCTCTCTGCATAGTCAGACCTGTGCATCT
TAAGGAATATTTGGACATTCAATGCATGTAATTCCATGGTCCCTCCAGCA
TTGGTGTGTTTGAGTGCCTCATTATAATCCTCTTCATGCATGAATATGAT
ACCAGCAATCAAGCGTAATGTCGCATTGCTCCCAATGGCTGGATCTGACA
ACCACTCTTTTAAACTTGAAATTGTTGATTCCTTGTTGTCAGGGCTAGAG
AGATAGAGAGCAAGCAACTTCACGG
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