CX069961 | Citrus Genome Database

Overview


Name	CX069961
Unique Name	CX069961
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	594

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2700	contig	Csv1_Contig2700:488..1079.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX069961 vs. ExPASy Swiss-Prot
Match: PARP1_MAIZE (Poly [ADP-ribose] polymerase 1 OS=Zea mays GN=PARP1 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.389e-52
Identity = 85/100 (85.00%), Postives = 92/100 (92.00%), Query Frame = -3

Query:  224 RKNPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 523
            R NPVGLMLLSEV LG++YELKKA  MDKPP GKHSTKGLGKTVP ES+FVKWRDDV VPCGKP PS++R+SELMYNEYIVYNT+QVKMQFLLKVRFHHK
Sbjct:  880 RNNPVGLMLLSEVALGDMYELKKATSMDKPPRGKHSTKGLGKTVPLESEFVKWRDDVVVPCGKPVPSSIRSSELMYNEYIVYNTSQVKMQFLLKVRFHHK 979

HSP 2 Score: 43.1282 bits (100), Expect = 3.389e-52
Identity = 18/26 (69.23%), Postives = 21/26 (80.77%), Query Frame = -2

Query:  504 KGIYFADLVSKSAQYCFTDKKKSSGL 581
            KG+YFADLVSKSAQYC+ D+    GL
Sbjct:  861 KGLYFADLVSKSAQYCYVDRNNPVGL 886

[Close]

BLAST of CX069961 vs. ExPASy Swiss-Prot
Match: PARP1_ORYSJ (Poly [ADP-ribose] polymerase 1 OS=Oryza sativa subsp. japonica GN=PARP1 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 9.785e-52
Identity = 82/100 (82.00%), Postives = 91/100 (91.00%), Query Frame = -3

Query:  224 RKNPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 523
            RKNPVGLMLLSEV LG++YELKKA  MDKPP GKHSTKGLGKTVP ES+F KWRDDV VPCGKP P++++ SELMYNEYIVYNT+QVKMQ+LLKVRFHHK
Sbjct:  877 RKNPVGLMLLSEVALGDMYELKKATSMDKPPRGKHSTKGLGKTVPLESEFAKWRDDVVVPCGKPVPASIKTSELMYNEYIVYNTSQVKMQYLLKVRFHHK 976

HSP 2 Score: 45.0542 bits (105), Expect = 9.785e-52
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = -2

Query:  504 KGIYFADLVSKSAQYCFTDKKKSSGL 581
            KG+YFADLVSKSAQYC+ D+K   GL
Sbjct:  858 KGLYFADLVSKSAQYCYVDRKNPVGL 883

[Close]

BLAST of CX069961 vs. ExPASy Swiss-Prot
Match: PARP1_ARATH (Poly [ADP-ribose] polymerase 1 OS=Arabidopsis thaliana GN=PARP1 PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 1.063e-50
Identity = 82/100 (82.00%), Postives = 90/100 (90.00%), Query Frame = -3

Query:  224 RKNPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 523
            +KNPVGLMLLSEV LGE++EL KAKYMDKPP GKHSTKGLGK VPQ+S+F KWR DVTVPCGKP  S V+ASELMYNEYIVY+TAQVK+QFLLKVRF HK
Sbjct:  883 KKNPVGLMLLSEVALGEIHELTKAKYMDKPPRGKHSTKGLGKKVPQDSEFAKWRGDVTVPCGKPVSSKVKASELMYNEYIVYDTAQVKLQFLLKVRFKHK 982

HSP 2 Score: 45.4394 bits (106), Expect = 1.063e-50
Identity = 21/26 (80.77%), Postives = 22/26 (84.62%), Query Frame = -2

Query:  504 KGIYFADLVSKSAQYCFTDKKKSSGL 581
            KGIYFADLVSKSAQYC+T KK   GL
Sbjct:  864 KGIYFADLVSKSAQYCYTCKKNPVGL 889

[Close]

BLAST of CX069961 vs. ExPASy Swiss-Prot
Match: PARP1_RAT (Poly [ADP-ribose] polymerase 1 OS=Rattus norvegicus GN=Parp1 PE=2 SV=4)

HSP 1 Score: 102.834 bits (255), Expect = 4.848e-27
Identity = 52/98 (53.06%), Postives = 68/98 (69.39%), Query Frame = -3

Query:  224 NPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 517
            +P+GL+LL EV LG +YELK A ++ K P GKHS KGLGKT P  S  +   D V VP G   PS V  + L+YNEYIVY+ AQV +++LLK++F+ K
Sbjct:  914 DPIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTAPDPSASIT-LDGVEVPLGTGIPSGVNDTCLLYNEYIVYDIAQVNLKYLLKLKFNFK 1010

HSP 2 Score: 37.7354 bits (86), Expect = 4.848e-27
Identity = 17/26 (65.38%), Postives = 19/26 (73.08%), Query Frame = -2

Query:  504 KGIYFADLVSKSAQYCFTDKKKSSGL 581
            KGIYFAD+VSKSA YC T +    GL
Sbjct:  893 KGIYFADMVSKSANYCHTSQGDPIGL 918

[Close]

BLAST of CX069961 vs. ExPASy Swiss-Prot
Match: PARP1_MOUSE (Poly [ADP-ribose] polymerase 1 OS=Mus musculus GN=Parp1 PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 1.069e-26
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = -3

Query:  224 NPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 517
            +P+GL++L EV LG +YELK A ++ K P GKHS KGLGKT P  S  +   + V VP G   PS V  + L+YNEYIVY+ AQV +++LLK++F+ K
Sbjct:  913 DPIGLIMLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSASIT-LEGVEVPLGTGIPSGVNDTALLYNEYIVYDIAQVNLKYLLKLKFNFK 1009

HSP 2 Score: 37.7354 bits (86), Expect = 1.069e-26
Identity = 17/26 (65.38%), Postives = 19/26 (73.08%), Query Frame = -2

Query:  504 KGIYFADLVSKSAQYCFTDKKKSSGL 581
            KGIYFAD+VSKSA YC T +    GL
Sbjct:  892 KGIYFADMVSKSANYCHTSQGDPIGL 917

[Close]

BLAST of CX069961 vs. ExPASy Swiss-Prot
Match: PARP1_HUMAN (Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=PARP1 PE=1 SV=4)

HSP 1 Score: 101.293 bits (251), Expect = 1.392e-26
Identity = 51/98 (52.04%), Postives = 67/98 (68.37%), Query Frame = -3

Query:  224 NPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 517
            +P+GL+LL EV LG +YELK A ++ K P GKHS KGLGKT P  S  +   D V VP G    S V  + L+YNEYIVY+ AQV +++LLK++F+ K
Sbjct:  914 DPIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSANIS-LDGVDVPLGTGISSGVNDTSLLYNEYIVYDIAQVNLKYLLKLKFNFK 1010

HSP 2 Score: 37.7354 bits (86), Expect = 1.392e-26
Identity = 17/26 (65.38%), Postives = 19/26 (73.08%), Query Frame = -2

Query:  504 KGIYFADLVSKSAQYCFTDKKKSSGL 581
            KGIYFAD+VSKSA YC T +    GL
Sbjct:  893 KGIYFADMVSKSANYCHTSQGDPIGL 918

[Close]

BLAST of CX069961 vs. ExPASy Swiss-Prot
Match: PARP1_CRIGR (Poly [ADP-ribose] polymerase 1 OS=Cricetulus griseus GN=PARP1 PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 1.392e-26
Identity = 51/98 (52.04%), Postives = 68/98 (69.39%), Query Frame = -3

Query:  224 NPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 517
            +P+GL+LL EV LG +YELK A ++ K P GKHS KGLGKT P  S  +   + V VP G   PS V  + L+YNEYIVY+ AQV +++LLK++F+ K
Sbjct:  913 DPIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSASIT-LEGVEVPLGTGIPSGVNDTCLLYNEYIVYDIAQVNLKYLLKLKFNFK 1009

HSP 2 Score: 37.7354 bits (86), Expect = 1.392e-26
Identity = 17/26 (65.38%), Postives = 19/26 (73.08%), Query Frame = -2

Query:  504 KGIYFADLVSKSAQYCFTDKKKSSGL 581
            KGIYFAD+VSKSA YC T +    GL
Sbjct:  892 KGIYFADMVSKSANYCHTSQGDPIGL 917

[Close]

BLAST of CX069961 vs. ExPASy Swiss-Prot
Match: PARP1_XENLA (Poly [ADP-ribose] polymerase 1 (Fragment) OS=Xenopus laevis GN=parp1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 8.808e-26
Identity = 50/98 (51.02%), Postives = 70/98 (71.43%), Query Frame = -3

Query:  224 NPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 517
            +P+GL+LL EV LG ++ELK A  + K P GKHS KGLG+T P  S  V+  D V VP GK   +N+  + L+YNEYIVY+ AQV +++LLK++F++K
Sbjct:  897 SPIGLILLGEVALGNMHELKAASQITKLPKGKHSVKGLGRTAPDPSATVQ-LDGVDVPLGKGTSANISDTSLLYNEYIVYDIAQVNLKYLLKLKFNYK 993

HSP 2 Score: 34.2686 bits (77), Expect = 8.808e-26
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = -2

Query:  534 KGIYFADLVSKSAQYC 581
            KGIYFAD+VSKSA YC
Sbjct:  876 KGIYFADMVSKSANYC 891

[Close]

BLAST of CX069961 vs. ExPASy Swiss-Prot
Match: PARP1_BOVIN (Poly [ADP-ribose] polymerase 1 OS=Bos taurus GN=PARP1 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.146e-25
Identity = 50/98 (51.02%), Postives = 67/98 (68.37%), Query Frame = -3

Query:  224 NPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 517
            +P+GL+LL E  LG +YELK A+++ K P GKHS KGLGKT P  S  +   D V VP G    S V  + L+YNEYIVY+ AQV +++LLK++F+ K
Sbjct:  916 DPIGLILLGEAALGNMYELKHARHISKLPKGKHSVKGLGKTTPDPSASIT-VDGVEVPLGTGISSGVNDTCLLYNEYIVYDIAQVHLKYLLKLKFNFK 1012

HSP 2 Score: 37.7354 bits (86), Expect = 1.146e-25
Identity = 17/26 (65.38%), Postives = 19/26 (73.08%), Query Frame = -2

Query:  504 KGIYFADLVSKSAQYCFTDKKKSSGL 581
            KGIYFAD+VSKSA YC T +    GL
Sbjct:  895 KGIYFADMVSKSANYCHTSQGDPIGL 920

[Close]

BLAST of CX069961 vs. ExPASy Swiss-Prot
Match: PARP1_CHICK (Poly [ADP-ribose] polymerase 1 OS=Gallus gallus GN=PARP1 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.146e-25
Identity = 48/98 (48.98%), Postives = 67/98 (68.37%), Query Frame = -3

Query:  224 NPVGLMLLSEVGLGEVYELKKAKYMDKPPDGKHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 517
            +P+GL+LL EV LG +YELK A ++ K P GKHS KGLGKT P +       D V VP G    + +  + L+YNEYIVY+ AQV +++LLK++F++K
Sbjct:  911 DPIGLILLGEVALGNMYELKNASHITKLPKGKHSVKGLGKTAP-DPTATTTLDGVEVPLGNGISTGINDTCLLYNEYIVYDVAQVNLKYLLKLKFNYK 1007

HSP 2 Score: 38.1206 bits (87), Expect = 1.146e-25
Identity = 17/26 (65.38%), Postives = 19/26 (73.08%), Query Frame = -2

Query:  504 KGIYFADLVSKSAQYCFTDKKKSSGL 581
            KGIYFAD+VSKSA YC T +    GL
Sbjct:  890 KGIYFADMVSKSANYCHTSQADPIGL 915

The following BLAST results are available for this feature:

BLAST of CX069961 vs. ExPASy Swiss-Prot

BLAST of CX069961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21


Match Name	E-value	Identity	Description
PARP1_MAIZE	3.389e-52	85.00	Poly [ADP-ribose] polymerase 1 OS=Zea mays GN=PARP...	[more]
PARP1_ORYSJ	9.785e-52	82.00	Poly [ADP-ribose] polymerase 1 OS=Oryza sativa sub...	[more]
PARP1_ARATH	1.063e-50	82.00	Poly [ADP-ribose] polymerase 1 OS=Arabidopsis thal...	[more]
PARP1_RAT	4.848e-27	53.06	Poly [ADP-ribose] polymerase 1 OS=Rattus norvegicu...	[more]
PARP1_MOUSE	1.069e-26	51.02	Poly [ADP-ribose] polymerase 1 OS=Mus musculus GN=...	[more]
PARP1_HUMAN	1.392e-26	52.04	Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=...	[more]
PARP1_CRIGR	1.392e-26	52.04	Poly [ADP-ribose] polymerase 1 OS=Cricetulus grise...	[more]
PARP1_XENLA	8.808e-26	51.02	Poly [ADP-ribose] polymerase 1 (Fragment) OS=Xenop...	[more]
PARP1_BOVIN	1.146e-25	51.02	Poly [ADP-ribose] polymerase 1 OS=Bos taurus GN=PA...	[more]
PARP1_CHICK	1.146e-25	48.98	Poly [ADP-ribose] polymerase 1 OS=Gallus gallus GN...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_13H11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13H11-O21-1-4.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX069961 ID=CX069961; Name=CX069961; organism=Citrus sinensis; type=EST; length=594bp
TTTTTTTAACACCAAAGTACCCTTTTTTTACACATTTACCAACATCATTT
ACATAGCCAAAAGCAGCAGTTGAAAGATCTCCAGGCAAACCCCAAAATGA
GATCTTACAATCTTATCCAAGAGTTAAAATTTCTCATGTGGTAATTAAAG
ACATTCAGATATTCAGACAATCAGTCATGACCTTTCCCAAAAGAGAGTGG
GCATCCAGTTACCTCCTTCATCTCTTGTGATGAAACCTCACCTTCAACAG
GAACTGCATCTTAACTTGAGCAGTATTATAAACAATGTATTCATTGTACA
TCAGCTCAGAAGCCCTGACATTTGAAGGTGCTGGTTTTCCACATGGCACA
GTGACATCATCTCTCCACTTCACAAAATCAGATTCCTGTGGTACAGTCTT
GCCAAGTCCTTTAGTGGAGTGCTTCCCATCAGGTGGTTTATCCATATACT
TCGCCTTCTTGAGCTCATAAACCTCTCCCAAGCCCACTTCACTCAGAAGC
ATTAAGCCCACTGGATTTTTTCTTATCCGTAAAGCAATACTGAGCACTTT
TACTGACTAGGTCAGCAAAGTAAATTCCCTTTACCAAACATATA