CX069960

Overview
NameCX069960
Unique NameCX069960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig866 contig Csv1_Contig866:397..1157. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069960 vs. ExPASy Swiss-Prot
Match: CCD31_ARATH (Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 5.883e-24
Identity = 56/117 (47.86%), Postives = 78/117 (66.67%), Query Frame = 3
Query:    3 WKMNPVTPLSFLDYIARRLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIEPSLGVEYEKQLLNILGTDKDKVEHCSKLIMQLAEQVRG---QGSQSNKRK 344
            WKM+ +TP+SF+D+I RRLGLK    W+FL +C R+LLS ISDS F+ YLPSV+A ATM+ +++ ++P   + Y+  LL +L   K+KV+ C  LI+QL     G   Q   S KRK
Sbjct:  184 WKMHLITPISFVDHIIRRLGLKNNAHWDFLNKCHRLLLSVISDSRFVGYLPSVVAAATMMRIIEQVDPFDPLSYQTNLLGVLNLTKEKVKTCYDLILQLPVDRIGLQIQIQSSKKRK 300          
BLAST of CX069960 vs. ExPASy Swiss-Prot
Match: CCD32_ARATH (Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.792e-20
Identity = 41/98 (41.84%), Postives = 70/98 (71.43%), Query Frame = 3
Query:    3 WKMNPVTPLSFLDYIARRLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIEPSLGVEYEKQLLNILGTDKDKVEHCSKLIMQ 296
            W+M+PVTP+SF D+I RR G K +   +F ++C+R+L+S I+D+ FM+Y PSV+A A M+ V + ++P   VEY+ Q+  +L  +++KV  C +L+++
Sbjct:  193 WRMHPVTPISFFDHIIRRFGSKWHQQLDFCRKCERLLISVIADTRFMRYFPSVLATAIMILVFEELKPCDEVEYQSQITTLLKVNQEKVNECYELLLE 290          
BLAST of CX069960 vs. ExPASy Swiss-Prot
Match: CCD33_ARATH (Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYCD3-3 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.824e-18
Identity = 47/124 (37.90%), Postives = 71/124 (57.26%), Query Frame = 3
Query:    3 WKMNPVTPLSFLDYIARRLGLKGYLCWEFLKRCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIEPSLGVEYEKQLLNILGTDKDKVEHCSKLIMQLAEQVRGQGSQSNKRKFGSITVPVVP 374
            W+M+PVTP+SF D+I RR   K +   EFL RC+ +LLS I DS F+ + PSV+A A M+ V+++++      Y+ QL+ +L  D +KV  C +L++          S S KR    +  P  P
Sbjct:  183 WRMHPVTPISFFDHIIRRYSFKSHHQLEFLSRCESLLLSIIPDSRFLSFSPSVLATAIMVSVIRDLKMCDEAVYQSQLMTLLKVDSEKVNKCYELVL--------DHSPSKKRMMNWMQQPASP 298          
The following BLAST results are available for this feature:
BLAST of CX069960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CCD31_ARATH5.883e-2447.86Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=... [more]
CCD32_ARATH8.792e-2041.84Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=... [more]
CCD33_ARATH4.824e-1837.90Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYCD3-3 PE=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_13H10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13H10-O19-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069960 ID=CX069960; Name=CX069960; organism=Citrus sinensis; type=EST; length=761bp
AGTGGAAGATGAATCCTGTAACCCCTCTTTCTTTTCTTGATTACATTGCC
AGGAGACTTGGGCTTAAGGGTTATCTCTGTTGGGAGTTTCTCAAGAGATG
CGACCGTATCCTTCTTTCTGCAATTTCAGATTCTAGTTTTATGCAATATC
TCCCTTCTGTAATGGCTAATGCTACAATGCTACACGTTGTCCAAAATATT
GAACCCTCTCTTGGAGTCGAATATGAGAAGCAACTATTGAACATTCTCGG
TACCGATAAGGACAAGGTAGAGCATTGCAGTAAGCTGATAATGCAATTGG
CAGAACAAGTCCGGGGGCAGGGCAGCCAATCCAATAAGCGCAAATTTGGT
TCGATTACTGTACCAGTAGTTCCAGGCAGCCCAAATGGTGTAATGGATGT
GTCGTTTAGCTCGTCAGATAGCTCAAACGATTCATGGTCTGTGGCATCGT
CTGTGTCTTCCTCGCCCGAGCCACTGTCCAAGAAGAACAGGTCTCATGCT
CAGGATCACGATCAGGATCAGCTCCTCCTACAGGGTGCCACGCCAGATTT
TCTTACTATTCCTCGTTATCTCTAGCTTGCCTCAAATTACTTTTCTGTTT
TTTTCCTGTGGACTACATATATAGTCGGTCCTTTATAAATAACATTAGAA
ACTGTTCGTTCTTTATGATGTGTAAGTTAAATTGCCTACCATCTCCGCAT
ATCCGTTTGGAAATTCAAAGCCGGAGACGGTTGGCATTTTATCCGGACGG
AAAACTGATGG
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