CX069959

Overview
NameCX069959
Unique NameCX069959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig866 contig Csv1_Contig866:489..1292. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX069959 vs. ExPASy Swiss-Prot
Match: CCD31_ARATH (Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 7.395e-12
Identity = 38/86 (44.19%), Postives = 54/86 (62.79%), Query Frame = -1 
Query:  553 RCDRILLSAISDSSFMQYLPSVMANATMLHVVQNIEPSLGVEYEKQLLNILGTDKDKVEHCSKLIMQLAEQVRG---QGSQSNKRK 801
            +C R+LLS ISDS F+ YLPSV+A ATM+ +++ ++P   + Y+  LL +L   K+KV+ C  LI+QL     G   Q   S KRK
Sbjct:  215 KCHRLLLSVISDSRFVGYLPSVVAAATMMRIIEQVDPFDPLSYQTNLLGVLNLTKEKVKTCYDLILQLPVDRIGLQIQIQSSKKRK 300
The following BLAST results are available for this feature:
BLAST of CX069959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CCD31_ARATH7.395e-1244.19Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_13H10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13H10-O19-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069959 ID=CX069959; Name=CX069959; organism=Citrus sinensis; type=EST; length=804bp
TTTTTTTTTTTTTTTTTAGAGACCATATGCTATTGAATTTTACTTGAACA
AGGTAATGACACAACAGAATGCCCCAAGTTCTAAAGACTTGGAGACATAA
GATGTCATATTAATAATGCAAGTACTCTTTCATGTCCATCAGTTTTCCGT
CCGGATAAAATGCCAACCGTCTCCGGCTTTGAATTTCCAAACGGATATGC
GGAGATGGTAGGCAATTTAACTTACACATCATAAAGAACGAACAGTTTCT
AATGTTATTTATAAAGGACCGACTATATATGTAGTCCACAGGAAAAAAAC
AGAAAAGTAATTTGAGGCAAGCTAGAGATAACGAGGAATAGTAAGAAAAT
CTGGCGTGGCACCCTGTAGGAGGAGCTGATCCTGATCGTGATCCTGAGCA
TGAGACCTGTTCTTCTTGGACAGTGGCTCGGGCGAGGAAGACACAGACGA
TGCCACAGACCATGAATCGTTTGAGCTATCTGACGAGCTAAACGACACAT
CCATTACACCATTTGGGCTGCCTGGAACTACTGGTACAGTAATCGAACCA
AATTTGCGCTTATTGGATTGGCTGCCCTGCCCCCGGACTTGTTCTGCCAA
TTGCATTATCAGCTTACTGCAATGCTCTACCTTGTCCTTATCGGTACCGA
GAATGTTCAATAGTTGCTTCTCATATTCGACTCCAAGAGAGGGTTCAATA
TTTTGGACAACGTGTAGCATTGTAGCATTAGCCATTACAGAAGGGAGATA
TTGCATAAAACTAGAATCTGAAATTGCAGAAAGAAGGATACGGTCGCATC
TCTT
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