CX069957

Overview
NameCX069957
Unique NameCX069957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4021 contig Csv1_Contig4021:664..1433. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_CITSI (30S ribosomal protein S3, chloroplastic OS=Citrus sinensis GN=rps3 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.382e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 2 
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEKK 184
            GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEKK
Sbjct:  159 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEKK 219
[Close]
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_DRANE (30S ribosomal protein S3, chloroplastic OS=Draba nemorosa GN=rps3 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.917e-26
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 2 
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  159 GIQVQIAGRIDGKEIARVEWIREGRVPLQTIDAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_ARAHI (30S ribosomal protein S3, chloroplastic OS=Arabis hirsuta GN=rps3 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.917e-26
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 2 
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  159 GIQVQIAGRIDGKEIARVEWIREGRVPLQTIDAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_PLAOC (30S ribosomal protein S3, chloroplastic OS=Platanus occidentalis GN=rps3 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.422e-26
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 2 
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  158 GIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFVDEE 217
[Close]
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_OLIPU (30S ribosomal protein S3, chloroplastic OS=Olimarabidopsis pumila GN=rps3 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.422e-26
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 2 
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  159 GIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_NASOF (30S ribosomal protein S3, chloroplastic OS=Nasturtium officinale GN=rps3 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.422e-26
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 2 
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  159 GIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_LOBMA (30S ribosomal protein S3, chloroplastic OS=Lobularia maritima GN=rps3 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.422e-26
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 2 
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  159 GIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_LEPVR (30S ribosomal protein S3, chloroplastic OS=Lepidium virginicum GN=rps3 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.422e-26
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 2 
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  159 GIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_CAPBU (30S ribosomal protein S3, chloroplastic OS=Capsella bursa-pastoris GN=rps3 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.422e-26
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 2 
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  159 GIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
[Close]
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_ARATH (30S ribosomal protein S3, chloroplastic OS=Arabidopsis thaliana GN=rps3 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.422e-26
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 2 
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  159 GIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218
The following BLAST results are available for this feature:
BLAST of CX069957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR3_CITSI1.382e-28100.0030S ribosomal protein S3, chloroplastic OS=Citrus ... [more]
RR3_DRANE4.917e-2693.3330S ribosomal protein S3, chloroplastic OS=Draba n... [more]
RR3_ARAHI4.917e-2693.3330S ribosomal protein S3, chloroplastic OS=Arabis ... [more]
RR3_PLAOC6.422e-2693.3330S ribosomal protein S3, chloroplastic OS=Platanu... [more]
RR3_OLIPU6.422e-2693.3330S ribosomal protein S3, chloroplastic OS=Olimara... [more]
RR3_NASOF6.422e-2693.3330S ribosomal protein S3, chloroplastic OS=Nasturt... [more]
RR3_LOBMA6.422e-2693.3330S ribosomal protein S3, chloroplastic OS=Lobular... [more]
RR3_LEPVR6.422e-2693.3330S ribosomal protein S3, chloroplastic OS=Lepidiu... [more]
RR3_CAPBU6.422e-2693.3330S ribosomal protein S3, chloroplastic OS=Capsell... [more]
RR3_ARATH6.422e-2693.3330S ribosomal protein S3, chloroplastic OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13H08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13H08-O15-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069957 ID=CX069957; Name=CX069957; organism=Citrus sinensis; type=EST; length=770bp
AGGAATTCAAGTACAAATTGCAGGGCGTCTTGACGGAAAAGAAATTGCGC
GCGCCGAATGGATCAGAGAAGGTAGAGTTCCTCTACAAACCATTGGAGCT
AAAATTGATTATTGTTCCTATACGGTTCGAACTATCTACGGGGTATTGGG
AATCAAAATTTGGATATTTGTAGACGAAAAAAAATAAGAGTTTACGGGTC
TTTAGAGCCCCCCCATTAATGGAAATAAACCAAACAAAGAACGAGCTCTT
TTTATCTTCAATCAAAACAAAAATGAGAAATTCCGCAATTCTATAGGGTT
GAATAAAAATTCGATTGATTTTTTTTTTTTTATATAATTGCTATGCTTAG
TGTGCGACTCGTTGGTTTTTTTTAGGGCTAGGATTCCAAAAAATGGACCG
TCCTGTAGTATGAACTAATAACTATAGCACTAATAACCAACTCATTGCTT
CGTATTATCTGAATCCAAAGAACCAGTCAAGATATAATATAGTGGTCATA
TCGTTGTAGCAACTGAAATTTGCATAACATAAAAACCCAATCTGATTGTA
GGTTGTGAAGTTCGAAGTTGTGAAAGAAAATCGAAAAGCATGCGGATAAA
TGGAAGGATGAGAGAAAGAGAGAAAGAAAATATCAATGATATAAGATTCC
AATATGTAAGGTCTGTAAGTCATCTCATAAAAAACAGTGTAATATAGCAT
CAATAATGATTCATCCCTAACTAGATGAATCCGCTCATAGAACAAAAAAA
TCAAGAGCCCCGAGCCAATA
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