CX069953

Overview
NameCX069953
Unique NameCX069953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length312
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7909 contig Csv1_Contig7909:668..980. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069953 vs. ExPASy Swiss-Prot
Match: PSAEA_NICSY (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.554e-13
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = -1
Query:  205 DQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 312
            DQDP +RYPVVVRFNKVNYANVSTNNYALDEIEEVK
Sbjct:  106 DQDPNTRYPVVVRFNKVNYANVSTNNYALDEIEEVK 141          
BLAST of CX069953 vs. ExPASy Swiss-Prot
Match: PSAEB_NICSY (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.642e-13
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = -1
Query:  205 DQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 312
            DQDP +RYPVVVRFNKVNYANVSTNNYALDE+EEVK
Sbjct:  108 DQDPNTRYPVVVRFNKVNYANVSTNNYALDEVEEVK 143          
BLAST of CX069953 vs. ExPASy Swiss-Prot
Match: PSAE_SPIOL (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea GN=PSAE-1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.919e-13
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = -1
Query:  208 DQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 312
            DQDPK+RYPVVVRFNKVNYANVSTNNYALDEI+EV
Sbjct:   90 DQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEV 124          
BLAST of CX069953 vs. ExPASy Swiss-Prot
Match: PSAE2_ARATH (Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana GN=PSAE2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.351e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = -1
Query:  205 DQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 312
            DQDPK+RYPVVVRF KVNYAN+STNNYALDE+EEVK
Sbjct:  110 DQDPKTRYPVVVRFAKVNYANISTNNYALDEVEEVK 145          
BLAST of CX069953 vs. ExPASy Swiss-Prot
Match: PSAE1_ARATH (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana GN=PSAE1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.133e-12
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = -1
Query:  208 DQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 312
            DQDPK+RYPVVVRF KVNYAN+STNNYALDE+EEV
Sbjct:  107 DQDPKTRYPVVVRFAKVNYANISTNNYALDEVEEV 141          
The following BLAST results are available for this feature:
BLAST of CX069953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSAEA_NICSY3.554e-1394.44Photosystem I reaction center subunit IV A, chloro... [more]
PSAEB_NICSY4.642e-1391.67Photosystem I reaction center subunit IV B, chloro... [more]
PSAE_SPIOL7.919e-1394.29Photosystem I reaction center subunit IV, chloropl... [more]
PSAE2_ARATH1.351e-1288.89Photosystem I reaction center subunit IV B, chloro... [more]
PSAE1_ARATH5.133e-1288.57Photosystem I reaction center subunit IV A, chloro... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_13H05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13H05-O9-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069953 ID=CX069953; Name=CX069953; organism=Citrus sinensis; type=EST; length=312bp
TTTTTTTTTTTTTTTTTGAATAACCAGTTCCTAATCGTAGCCCGTACGGT
ATAAGTTGTGAACATCTTTTCGTTGGATAAGCATAAACATGATGGCGAAG
TAGACAGAAGAAGAATTCACTTGGAGAATAGAATACACATTCCTGGCACA
CAAAGGCTTAATCTAGAGCGGGGAATAATATGCAAATCAAAATTACATAA
CTCATTTAACTTCTTCGATCTCATCCAATGCATAGTTGTTCGTTGATACA
TTTGCATAGTTAACCTTGTTGAATCGAACCACAACTGGGTACCGACTCTT
GGGATCCTGGTC
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