CX069948

Overview
NameCX069948
Unique NameCX069948
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7274 contig Csv1_Contig7274:902..1721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069948 vs. ExPASy Swiss-Prot
Match: RAP24_ARATH (Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.568e-41
Identity = 94/176 (53.41%), Postives = 107/176 (60.80%), Query Frame = -3
Query:  291 IRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSGNKKXXXXXXXXXXXXXVKNECSLSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFMLQKYPSYEIDWASILS 818
            IRLP+NRTRLWLGTFDT              LRGDFARLNFPNLRHNGSHIGG+FGEYKPLHSSVDAKL AIC+++AETQK    K  K S   +KK       +                     + +AGSSP+SDLT  D  EPP        +E F L+KYPSYEIDW SIL+
Sbjct:  167 IRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSHIGGDFGEYKPLHSSVDAKLEAICKSMAETQK--QDKSTKSSKKREKKVSSPDLSEKVKAEENSVSIGGSPPVTEFEESTAGSSPLSDLTFADPEEPPQ------WNETFSLEKYPSYEIDWDSILA 334          
BLAST of CX069948 vs. ExPASy Swiss-Prot
Match: ERF58_ARATH (Ethylene-responsive transcription factor ERF058 OS=Arabidopsis thaliana GN=ERF058 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.395e-27
Identity = 84/176 (47.73%), Postives = 98/176 (55.68%), Query Frame = -3
Query:  294 IRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAE-TQKLGTSKKEKQSNSAQKKRHRSGNKKXXXXXXXXXXXXXVKNECSLSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFMLQKYPSYEIDWASIL 818
            IRLP+NRTRLWLGTFDT              LRGDFARLNFP+LRHN         EY+PL SSVDAKL AIC+NLAE TQK   S K+    S+ +KR  +   K             +  E   S GS  SSP+S+LT  D     +E E+        L+KYPSYEIDW SIL
Sbjct:   98 IRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPDLRHN--------DEYQPLQSSVDAKLEAICQNLAETTQKQVRSTKK----SSSRKRSSTVAVKLPEEDYSSAGSSPLLTESYGSGGS--SSPLSELTFGD-----TEEEIQPPWNENALEKYPSYEIDWDSIL 254          
BLAST of CX069948 vs. ExPASy Swiss-Prot
Match: ERF55_ARATH (Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.630e-22
Identity = 76/176 (43.18%), Postives = 90/176 (51.14%), Query Frame = -3
Query:  291 IRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSGNKKXXXXXXXXXXXXXVKNECSLSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFMLQKYPSYEIDWASILS 818
            IRLP+NRTRLWLGTFDT              LRGD ARLNFP LR+       + GEY P+ ++VDAKL AI   LAE  K    K E+ S    K    S  +                +    SDGS   SP SD+  Q++ + P        +ENFML K PSYEIDWASILS
Sbjct:  158 IRLPRNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFPALRYQTGSSPSDTGEYGPIQAAVDAKLEAI---LAE-PKNQPGKTERTSRKRAKAAASSAEQ---------PSAPQQHSGSGESDGS--GSPTSDVMVQEMCQEPEM----PWNENFMLGKCPSYEIDWASILS 314          
BLAST of CX069948 vs. ExPASy Swiss-Prot
Match: ERF60_ARATH (Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.877e-19
Identity = 68/177 (38.42%), Postives = 88/177 (49.72%), Query Frame = -3
Query:  297 IRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSGNKKXXXXXXXXXXXXXVKNECSLSDGS--AGSSPVSDLTC-QDLTEPPSELELDAASENFMLQKYPSYEIDWASI 818
            IRLPKNRTRLWLGTFDT              LRG+FARLNFP  RH   + GG    + PLHSSVDAKL  IC++L +T+ +     E +    + +   S                   +E S SD S    SSP S +T   D ++   +        +F L+K+PS EIDW +I
Sbjct:  108 IRLPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFPQFRHEDGYYGGG-SCFNPLHSSVDAKLQEICQSLRKTEDIDLPCSETELFPPKTEYQES------------EYGFLRSDENSFSDESHVESSSPESGITTFLDFSDSGFD-----EIGSFGLEKFPSVEIDWDAI 266          
BLAST of CX069948 vs. ExPASy Swiss-Prot
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.835e-17
Identity = 63/184 (34.24%), Postives = 85/184 (46.20%), Query Frame = -3
Query:  297 IRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHSSVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSG----------NKKXXXXXXXXXXXXXVKNECSLSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFMLQKYPSYEIDWASI 818
            IRLPKNRTRLWLGTF+T              LRGD A+LNFPNL H          +  PL SSVD KL AIC++L +T+++ +   + +  S      ++            K+               +E SL D S      SD T  D ++   E        +F L+K+PS EIDW +I
Sbjct:   86 IRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFPNLIHE---------DMNPLPSSVDTKLQAICKSLRKTEEICSVSDQTKEYSVYSVSDKTELFLPKAELFLPKREHLETNELSNESPRSDETSLLDESQAEYSSSDKTFLDFSDTEFE-----EIGSFGLRKFPSVEIDWDAI 255          
BLAST of CX069948 vs. ExPASy Swiss-Prot
Match: ERF57_ARATH (Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.359e-13
Identity = 61/175 (34.86%), Postives = 82/175 (46.86%), Query Frame = -3
Query:  297 IRLPKNRTRLWLGTFDTXXXXXXXXXXXXXXLRGDFARLNFPNLRHNGSHIGGEFGEYKPLHS-SVDAKLAAICENLAETQKLGTSKKEKQSNSAQKKRHRSGNKKXXXXXXXXXXXXXVKNECSLSDGSAGSSPVSDLTCQDLTEPPSELELDAASENFMLQKYPSYEIDWASI 818
            IRLPKNRTRLWLGTF+T              +RGD ARLNFP++           G YK + S S++AK+ +IC     +  L   + EKQ+ + +     S  +K                      G +GSSP SD+T  D +   S+   +  S    L KYPS EIDW +I
Sbjct:  126 IRLPKNRTRLWLGTFETAQEAALAYDQAAHKIRGDNARLNFPDIVRQ--------GHYKQILSPSINAKIESIC----NSSDLPLPQIEKQNKTEEVLSGFSKPEKEPEFGEIYGC------------GYSGSSPESDITLLDFS---SDCVKEDESFLMGLHKYPSLEIDWDAI 273          
The following BLAST results are available for this feature:
BLAST of CX069948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RAP24_ARATH1.568e-4153.41Ethylene-responsive transcription factor RAP2-4 OS... [more]
ERF58_ARATH6.395e-2747.73Ethylene-responsive transcription factor ERF058 OS... [more]
ERF55_ARATH1.630e-2243.18Ethylene-responsive transcription factor ERF055 OS... [more]
ERF60_ARATH2.877e-1938.42Ethylene-responsive transcription factor ERF060 OS... [more]
ERF56_ARATH7.835e-1734.24Ethylene-responsive transcription factor ERF056 OS... [more]
ERF57_ARATH2.359e-1334.86Ethylene-responsive transcription factor ERF057 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_13H02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13H02-O3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069948 ID=CX069948; Name=CX069948; organism=Citrus sinensis; type=EST; length=820bp
TTTTTTTTTTTTTTTTTCGATTACAAAGAGACACTTATTATATTCGATAC
ATAGTCTATGGACACATACAAGGAAAGAAACACGAATTTCTCCCAGGTTC
AGCATGACTAAAACCAGCTGACCACGGTGGAGATTTACATCCATATTAAC
ATACTAATAATAAGCTTGGCGCTGCAAATGCCAAAAACTCCATTGCAGCC
GCCACTAACAACTAAGTCTCTCCTACTAAACCCTAAACCCAACTACAAAT
TACAAATTACAAACACGCCTTAAACAATGACTTGTACTTAAGATAATATT
GAAGCCCAATCAATCTCATAAGATGGGTACTTCTGCAACATGAAATTCTC
CGAAGCAGCATCCAATTCAAGCTCAGAAGGTGGTTCGGTAAGATCCTGAC
ACGTCAAATCCGAAACGGGAGAAGACCCAGCTGACCCATCACTCAAACTG
CACTCGTTCTTAACACCGACGCCTGCACCTCCGGCTCCCTCCACGACGTC
AACTTTCTTATTCCCGGATCGGTGTCGTTTCTTCTGGGCGGAGTTACTTT
GCTTCTCTTTCTTACTAGTCCCCAGTTTCTGCGTCTCGGCCAAGTTCTCA
CAAATGGCTGCCAATTTCGCATCAACTGAAGAATGAAGAGGCTTGTACTC
GCCGAACTCGCCACCGATGTGAGACCCATTGTGACGTAGGTTAGGGAAGT
TGAGCCGAGCGAAGTCGCCACGTAGCTTGTAGGCCGCCTTATCGTAGGCC
AACGCGGCTTCTTCGGCCGTGTCAAAAGTGCCGAGCCAGAGCCGAGTCCG
GTTCTTGGGCAAGCGGATCT
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