CX069947

Overview
NameCX069947
Unique NameCX069947
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11477 contig Csv1_Contig11477:204..946. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069947 vs. ExPASy Swiss-Prot
Match: Y1615_ARATH (Uncharacterized basic helix-loop-helix protein At1g06150 OS=Arabidopsis thaliana GN=At1g06150 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 45/133 (33.83%), Postives = 65/133 (48.87%), Query Frame = 2
Query:   80 ILVWEDGFCDFFECERAGSGYMKGRFGAD----IFFKMSHEVYNFGEGLVGKVAADNSHKWVFKEATTESEPGFTSSWNASIDPQPKAWEFQFNSGIQTIAIISVRE-GIIQLGSFDKIVEDLNLVISVQRKF 463
            +L  ED +C   E          GR   D       KMS+ V++ GEG+VG+VA    H+W+F E   +S          S       WE Q ++GI+TI I++V   G++QLGS  K+ ED  LV  ++  F
Sbjct:   33 VLTLEDVYCVNHERGLMPESLHGGRHAHDPLGLAVAKMSYHVHSLGEGIVGQVAISGQHQWIFSEYLNDSH---------STLQVHNGWESQISAGIKTILIVAVGSCGVVQLGSLCKVEEDPALVTHIRHLF 156          
The following BLAST results are available for this feature:
BLAST of CX069947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1615_ARATH4.185e-1133.83Uncharacterized basic helix-loop-helix protein At1... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_13G12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G12-M23-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069947 ID=CX069947; Name=CX069947; organism=Citrus sinensis; type=EST; length=742bp
GATCATCACATTGCTTTGTTGCAGGTGGGATCGTGGAGGCAGTGCTCTTG
ATCGCTCCAAAGGCAATAAAAGGAACTGGATTCTTGTTTGGGAAGATGGG
TTCTGTGATTTTTTTGAATGTGAACGTGCCGGAAGTGGATATATGAAAGG
GAGGTTTGGAGCTGATATCTTCTTCAAAATGTCTCATGAAGTTTATAATT
TTGGAGAAGGATTAGTAGGTAAAGTTGCAGCAGACAATAGTCATAAGTGG
GTGTTTAAAGAAGCCACAACAGAAAGTGAACCTGGCTTCACCTCCTCTTG
GAATGCTTCTATTGATCCTCAACCCAAGGCTTGGGAATTTCAATTTAATT
CAGGAATTCAGACAATTGCTATCATTTCTGTGAGAGAAGGCATCATTCAA
CTGGGCTCCTTTGATAAGATTGTGGAAGATCTCAATCTGGTGATCAGCGT
TCAGAGGAAATTCAGCTACCTTCAGAGCATTCCTGGTGTCTTTGCCATAC
AAAGGCCATATCTGCCAGTCCATTTTCCATACATCATCAAACCCAATAAT
CATACAATGGAAAGCCAGGAAACAGCTCTCTTAGCCGATAACAAGTGCCT
CCTAACTGGAGCAAAAAGATTGCTCCATGAAATACCTGAAGATTCTCCGC
TCAAATCTATTAACATAGGTTGGAACAGCCCTCAAATTGGAATTGCAGGA
GCACCTATTTGGTCAATACCTCCTCTTATGCCAACCATGTCA
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