CX069945 | Citrus Genome Database

Overview


Name	CX069945
Unique Name	CX069945
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	743

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig4320	contig	Csv1_Contig4320:1..743.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.878e-11
Identity = 41/71 (57.75%), Postives = 45/71 (63.38%), Query Frame = -2

Query:  359 KLLLGNRPAIDERPP----NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 556
            K L G    +D  P     N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:    6 KTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.204e-11
Identity = 41/71 (57.75%), Postives = 45/71 (63.38%), Query Frame = -2

Query:  359 KLLLGNRPAIDERPP----NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 556
            K L G    +D  P     N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:    6 KTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 40/71 (56.34%), Postives = 45/71 (63.38%), Query Frame = -2

Query:  359 KLLLGNRPAIDERPP----NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 556
            K L G    ++  P     N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = -2

Query:  359 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 511
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = -2

Query:  359 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 511
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 40/71 (56.34%), Postives = 45/71 (63.38%), Query Frame = -2

Query:  359 KLLLGNRPAIDERPP----NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 556
            K L G    ++  P     N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:    6 KTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 40/71 (56.34%), Postives = 45/71 (63.38%), Query Frame = -2

Query:  359 KLLLGNRPAIDERPP----NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 556
            K L G    ++  P     N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = -2

Query:  359 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 511
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = -2

Query:  359 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 511
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = -2

Query:  359 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 511
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of CX069945 vs. ExPASy Swiss-Prot

BLAST of CX069945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64


Match Name	E-value	Identity	Description
UBIQ_EIMBO	1.878e-11	57.75	Ubiquitin OS=Eimeria bovis PE=2 SV=1	[more]
UBIQ_PHYIN	3.204e-11	57.75	Ubiquitin OS=Phytophthora infestans PE=1 SV=1	[more]
UBIQ_XENLA	5.465e-11	56.34	Ubiquitin OS=Xenopus laevis PE=1 SV=1	[more]
UBIQ_WHEAT	5.465e-11	69.23	Ubiquitin OS=Triticum aestivum PE=3 SV=1	[more]
UBIQ_TRYCR	5.465e-11	69.23	Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1	[more]
UBIQ_STRPU	5.465e-11	56.34	Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV...	[more]
UBIQ_SPOFR	5.465e-11	56.34	Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1	[more]
UBIQ_SOYBN	5.465e-11	69.23	Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1	[more]
UBIQ_SOLTU	5.465e-11	69.23	Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1	[more]
UBIQ_SOLLC	5.465e-11	69.23	Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_13G11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G11-M21-1-4.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX069945 ID=CX069945; Name=CX069945; organism=Citrus sinensis; type=EST; length=743bp
TTTTCAGATAATGAAGGGTATTATTATTTCACTGGCAAACGAACACATAT
CCGAATGCTTATACACGTCCAGATACATTTTCTACGCTTATACACGTCCA
GATACATTTTCTACGCTTATACACGTCCAGATACATTTTCTACGCTTATA
CACGTCCAGATACATTCTCAAAGGTCAAACCTCAGGAGAGGCATCCACAA
ACTACCCCAACCAAACACAAACCAAAAGATCTGCCTCTGCTGGTCCGGTG
GAGTTCCCTTCTTGTCCTGGATCTTAGCCTTGACATTGTCGATTGTGTCA
GAGCTTTCGACCTTCAAATTTATGTTTTGCCGGTCAGGGTTTTCACAAAT
ATCTGCATGCCACCCCTGAAACGGCGGACCGAATGAAGGGTTGACCCGTG
GATGTTGTAGTCTACAAGTGTGCGACCATCCTCGAGTCGTTTGCCAGCAA
AGATGAACCTCTGCTGGTCTCGTAGGATCTCTTCCTTGTCCTCGATCTTG
ACAGAGAGATTAGGAGGCCTTTCATCTATTGCTGGCCTATTGCCAAGCAA
TAACTTTTTATCTTCTTCTCAAGTCTGAAGGGGAGCCAGTTCGTGATCAT
CCTGTCATAGCTCGCCTTGTAGAGATCAAGGGATTGCTGGATGAGATTAA
ACAACTCGATGAGAATCTTCCATCAGAGTTAGATGAGATTTTGAAGAATG
ACCATTCAGCTGAAGCTTCGGCAAAGTTGGTTAGAGAGAGTGC