CX069939

Overview
NameCX069939
Unique NameCX069939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069939_ssr166 microsatellite CX069939_ssr166:166..175. BLAST: Citrus ESTs to TAIR9
CX069939_ssr291 microsatellite CX069939_ssr291:291..300. BLAST: Citrus ESTs to TAIR9
Homology
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BLAST of CX069939 vs. ExPASy Swiss-Prot
Match: YMF16_ARATH (Uncharacterized tatC-like protein ymf16 OS=Arabidopsis thaliana GN=YMF16 PE=2 SV=2)

HSP 1 Score: 245.358 bits (625), Expect = 2.629e-64
Identity = 123/158 (77.85%), Postives = 127/158 (80.38%), Query Frame = 3 
Query:  291 IYISYEFHFAPETLLGEVRIRSVRILIGLGLTWFTCYWFPEELISPLTKPFLTLPLDSYFVRTQLTEAPPTYVATSSIACSYFVFPLISYQIWCFLIPSCYGEQRAKYNRXXXXXXXXXXXXXXXTPPRVVPNVWHFPYFVGATSTNSLMIKLQPKIY 764
            +YISYEF+FA ET+LGEVRIRSVRILIGLGLTWFTCYWF EELI  L  PFLTLP D YFV TQLTEA  T+VATSSIACSYFVFPLISYQIWCFLIPSCYGEQR KYNR               T   VVPNVWHF YFVGATSTNSLMIKLQPKIY
Sbjct:    4 LYISYEFNFALETILGEVRIRSVRILIGLGLTWFTCYWFSEELIFLLALPFLTLPFDLYFVCTQLTEAFSTFVATSSIACSYFVFPLISYQIWCFLIPSCYGEQRTKYNRFFYLSGFCFFLFLFLTLSWVVPNVWHFLYFVGATSTNSLMIKLQPKIY 161
[Close]
BLAST of CX069939 vs. ExPASy Swiss-Prot
Match: YMF16_MARPO (Uncharacterized tatC-like protein ymf16 OS=Marchantia polymorpha GN=YMF16 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.500e-43
Identity = 90/152 (59.21%), Postives = 103/152 (67.76%), Query Frame = 3 
Query:  312 HFAPETLLGEVRIRSVRILIGLGLTWFTCYWFPEELISPLTKPFLTLP-LDSYFVRTQLTEAPPTYVATSSIACSYFVFPLISYQIWCFLIPSCYGEQRAKYNRXXXXXXXXXXXXXXXTPPRVVPNVWHFPYFVGATSTNSLMIKLQPKIY 764
            +F  +T+L EVRIR   ILI    TWFTCYWF EE I  L KPFLTLP LDS F+ TQLTEA  TYV TS I+C YF+FP +SYQIWCFL+PSCY EQR KYN+               T   +VPNVWHF Y +  TSTN L+IKLQPKI+
Sbjct:    2 NFVLKTILEEVRIRVFWILICFSFTWFTCYWFSEEFIFLLAKPFLTLPYLDSSFICTQLTEALSTYVTTSLISCFYFLFPFLSYQIWCFLMPSCYEEQRKKYNKLFYLSGFCFFLFFFVTFVWIVPNVWHFLYKLSTTSTNLLIIKLQPKIF 153
The following BLAST results are available for this feature:
BLAST of CX069939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YMF16_ARATH2.629e-6477.85Uncharacterized tatC-like protein ymf16 OS=Arabido... [more]
YMF16_MARPO1.500e-4359.21Uncharacterized tatC-like protein ymf16 OS=Marchan... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_13G08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G08-M15-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069939 ID=CX069939; Name=CX069939; organism=Citrus sinensis; type=EST; length=765bp
AGAAGAGTGGGTATGCGGGCTTCTTTCGCTTGACTTTTTTTGCACTAGGT
CACAACGATCTCAAAAAAAGTGAAAGAAAAATGATAGGATGTGCTCCGAA
GGCCAGAGTTCGCAGAGTCGGGTAGTTCCGCTCATTTATTTCCGTTCGAG
ATCCATCGTCCTCGGGAGAGAGAGAAAGTAATCGGCAGGGAGGCATTACT
CCCACCCGGAAAACGTGCAACCAACCTTTCCTCTCCTGCGCGGGCTCGGG
GCTTCTAATCAAATATTTCTATTTTTCCTTTGAATTACTCATATATATAT
CCTATGAATTTCATTTCGCACCGGAAACTCTTCTAGGAGAAGTTCGAATC
CGTTCCGTTCGGATATTGATCGGTCTTGGTTTGACATGGTTTACGTGTTA
CTGGTTCCCGGAAGAGTTAATATCTCCATTAACTAAACCCTTTCTTACCC
TGCCTTTGGACTCGTATTTTGTTCGTACACAATTAACGGAGGCCCCCCCG
ACATATGTTGCAACGTCTTCAATAGCATGCTCTTACTTCGTCTTTCCTTT
AATAAGTTATCAAATTTGGTGCTTTTTGATCCCTAGTTGCTATGGGGAAC
AAAGGGCGAAATACAATCGATTCCTCCATTTAAGTGGTTCTCGCTTTTCC
TTCTTCCTGTTCCTAACTCCTCCCCGGGTAGTTCCCAATGTTTGGCACTT
TCCATACTTCGTGGGTGCAACATCAACAAATTCGCTCATGATCAAGTTAC
AACCTAAGATCTATG
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