CX069937

Overview
NameCX069937
Unique NameCX069937
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length400
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1496 contig Csv1_Contig1496:956..1361. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069937 vs. ExPASy Swiss-Prot
Match: PAPA5_CARPA (Cysteine proteinase (Fragment) OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 8.948e-33
Identity = 61/65 (93.85%), Postives = 65/65 (100.00%), Query Frame = 2
Query:    2 SRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTVAA 196
            SRRL+HGVLLVGYGSAGYAPIRLKEKPYW+IKNSWGE+WGENGYYKICRGRN+CGVDSMVSTVAA
Sbjct:   26 SRRLNHGVLLVGYGSAGYAPIRLKEKPYWVIKNSWGENWGENGYYKICRGRNICGVDSMVSTVAA 90          
BLAST of CX069937 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.375e-31
Identity = 57/67 (85.07%), Postives = 64/67 (95.52%), Query Frame = 2
Query:    2 SRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTVAAAV 202
            +RRL+HGVLLVGYG+AGYAP R KEKPYWIIKNSWGE+WGENG+YKIC+GRN+CGVDSMVSTVAA V
Sbjct:  297 TRRLNHGVLLVGYGAAGYAPARFKEKPYWIIKNSWGETWGENGFYKICKGRNICGVDSMVSTVAATV 363          
BLAST of CX069937 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.090e-30
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 2
Query:    8 RLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTVAAA 199
            RLDHGVLLVG+G   YAPIRLKEKPYWIIKNSWG++WGE GYYKICRGRNVCGVDSMVSTVAAA
Sbjct:  296 RLDHGVLLVGFGKGAYAPIRLKEKPYWIIKNSWGQNWGEQGYYKICRGRNVCGVDSMVSTVAAA 359          
BLAST of CX069937 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 9.260e-30
Identity = 56/65 (86.15%), Postives = 63/65 (96.92%), Query Frame = 2
Query:    2 SRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTVAA 196
            SRRL+HGVLLVGYGSAG++  RLKEKPYWIIKNSWGESWGENG+YKIC+GRN+CGVDS+VSTVAA
Sbjct:  294 SRRLNHGVLLVGYGSAGFSQARLKEKPYWIIKNSWGESWGENGFYKICKGRNICGVDSLVSTVAA 358          
BLAST of CX069937 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.281e-28
Identity = 56/67 (83.58%), Postives = 62/67 (92.54%), Query Frame = 2
Query:    5 RRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRG---RNVCGVDSMVSTVAA 196
            R LDHGVLLVGYG++G+APIRLK+KPYWIIKNSWGE+WGENGYYKICRG   RN CGVDSMVSTV+A
Sbjct:  299 RHLDHGVLLVGYGASGFAPIRLKDKPYWIIKNSWGENWGENGYYKICRGSNVRNKCGVDSMVSTVSA 365          
BLAST of CX069937 vs. ExPASy Swiss-Prot
Match: CPR1_DROME (Putative cysteine proteinase CG12163 OS=Drosophila melanogaster GN=CG12163 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.610e-16
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 2
Query:    5 RRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTVAAA 199
            + LDHGVL+VGYG + Y P   K  PYWI+KNSWG  WGE GYY++ RG N CGV  M ++   A
Sbjct:  551 KNLDHGVLVVGYGVSDY-PNFHKTLPYWIVKNSWGPRWGEQGYYRVYRGDNTCGVSEMATSAVLA 614          
BLAST of CX069937 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.123e-14
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 2
Query:   11 LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVST 187
            LDHG+L+VGY +     I  K  PYWI+KNSWG  WGE GY  + RG+N CGV + VST
Sbjct:  284 LDHGILIVGYSAKN--TIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVST 340          
BLAST of CX069937 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.343e-12
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 2
Query:   11 LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVST 187
            LDH VLLVGYG      +  K +P+WI+KNSWG  WGENGY+++ RG   CG++++ ++
Sbjct:  263 LDHAVLLVGYG------VSEKNEPFWIVKNSWGVEWGENGYFRMYRGDGSCGINTVATS 315          
BLAST of CX069937 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.993e-12
Identity = 31/59 (52.54%), Postives = 37/59 (62.71%), Query Frame = 2
Query:   11 LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVST 187
            +DH VLLVGYG+    P       YW IKNSWG  WGE GYY + RG   CGV++M S+
Sbjct:  407 IDHAVLLVGYGNRSNIP-------YWAIKNSWGSDWGEEGYYYLYRGSGACGVNTMASS 458          
BLAST of CX069937 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.667e-12
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 2
Query:   11 LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVST 187
            +DH VLLVGYG+         + P+W IKNSWG  WGE GYY + RG   CGV++M S+
Sbjct:  429 IDHAVLLVGYGNRS-------DVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASS 480          
The following BLAST results are available for this feature:
BLAST of CX069937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PAPA5_CARPA8.948e-3393.85Cysteine proteinase (Fragment) OS=Carica papaya PE... [more]
RD19A_ARATH8.375e-3185.07Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
CYSP_PEA7.090e-3089.06Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
A494_ARATH9.260e-3086.15Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
CYSP1_MAIZE2.281e-2883.58Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
CPR1_DROME7.610e-1655.38Putative cysteine proteinase CG12163 OS=Drosophila... [more]
CYSP1_DICDI7.123e-1455.93Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CATL_SCHMA1.343e-1249.15Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
CATF_MOUSE2.993e-1252.54Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]
CATF_HUMAN6.667e-1250.85Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13G07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G07-M13-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069937 ID=CX069937; Name=CX069937; organism=Citrus sinensis; type=EST; length=400bp
CTCGAGGCGATTGGACCATGGAGTGTTGCTCGTGGGATACGGTTCAGCTG
GCTATGCTCCAATCAGGTTGAAGGAGAAGCCATACTGGATCATCAAGAAT
TCATGGGGTGAGAGCTGGGGAGAGAACGGATACTACAAAATATGCAGGGG
TCGCAACGTCTGTGGAGTCGATTCCATGGTTTCGACCGTAGCTGCTGCTG
TTTGACTCCAATTAAGGAGTAGGTTGTAGTAGCAGATACAGGTCCATTGG
ATGTTTTGTATATAAAGCATGCGACTTTAATGTTGAAACAATTTCCTCAA
TGCATAAGAAATGATTTCTTATTGCATGTGGGTGTCAAACTGAAATGTCT
CATTTATGTCATTTAAGTGGAACTCCTTTGTTGTAAAAAAAAAAAAAAAA
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