CX069933

Overview
NameCX069933
Unique NameCX069933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069933 vs. ExPASy Swiss-Prot
Match: DAPB1_ARATH (Dihydrodipicolinate reductase 1, chloroplastic OS=Arabidopsis thaliana GN=DAPB1 PE=2 SV=2)

HSP 1 Score: 406.757 bits (1044), Expect = 7.426e-113
Identity = 195/232 (84.05%), Postives = 220/232 (94.83%), Query Frame = -3
Query:  111 VCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVLREGNMR 806
            VCGKEI VHG ++RE VL+SVF+K+P +IVVDYT+P+AVN NAELYSKVGVPFVMGTTGGDR +L+ET+E + +YAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSL V+ESHQA KLD SGTAKAVISCFQ+LGVS+DMDQIQ+IRDPKQQ+EMVGVPEEH+ GHAFH+YHLTSPD+TVSFEFQHNVCGRSIYAEGTVDAVLFL+KK++LKAD+RIYNMIDVLREGNMR
Sbjct:  116 VCGKEITVHGPTEREKVLSSVFEKHPELIVVDYTIPSAVNDNAELYSKVGVPFVMGTTGGDRNKLYETVEEAKIYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLDVMESHQASKLDASGTAKAVISCFQELGVSYDMDQIQLIRDPKQQVEMVGVPEEHISGHAFHLYHLTSPDETVSFEFQHNVCGRSIYAEGTVDAVLFLAKKIRLKADQRIYNMIDVLREGNMR 347          
BLAST of CX069933 vs. ExPASy Swiss-Prot
Match: DAPB2_ARATH (Dihydrodipicolinate reductase 2, chloroplastic OS=Arabidopsis thaliana GN=DAPB2 PE=2 SV=1)

HSP 1 Score: 404.445 bits (1038), Expect = 3.685e-112
Identity = 193/232 (83.19%), Postives = 219/232 (94.40%), Query Frame = -3
Query:  111 VCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVLREGNMR 806
            VCGKEI VHG ++RE VL+SVF+KYP +IVVDYT+P+AVN NAELY KVGVPFVMGTTGGDR RL++T+E S +YAVISPQMGKQVVAFLAAMEIM+EQFPGAF+GYSL+V+ESHQA KLD SGTAKAVISCFQKLGVS+DMDQIQ+IRDPKQQ+E+VGVPEEH+ GHAFH+YHLTSPD+TVSFEFQHNVCGRSIYAEGTVDAVLFL+KK++ KA+KRIYNMIDVLREGNMR
Sbjct:  118 VCGKEILVHGPTEREKVLSSVFEKYPELIVVDYTIPSAVNDNAELYGKVGVPFVMGTTGGDRTRLYKTVEESKIYAVISPQMGKQVVAFLAAMEIMSEQFPGAFAGYSLEVMESHQASKLDASGTAKAVISCFQKLGVSYDMDQIQLIRDPKQQIEVVGVPEEHVSGHAFHLYHLTSPDKTVSFEFQHNVCGRSIYAEGTVDAVLFLAKKIRSKAEKRIYNMIDVLREGNMR 349          
BLAST of CX069933 vs. ExPASy Swiss-Prot
Match: DAPB1_ORYSJ (Probable dihydrodipicolinate reductase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=DAPB1 PE=2 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 1.112e-100
Identity = 175/232 (75.43%), Postives = 207/232 (89.22%), Query Frame = -3
Query:  111 VCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVLREGNMR 806
            +C +EI +   S+ ES+L S+   YP+MIVVDYTVP AVN NAELY K+G+PFVMGTTGG+R  LH+T+E++NVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGY L+V+ESHQA KLD SGTAKAVISCFQKLGVSF++++++ +RDP++QL +VGVPEEHL GHAFHMYHLTSPD+TVSFEFQHNVCGRSIYAEGTVDA LFL KK+Q  A+K++Y+MIDVLREGNMR
Sbjct:  112 ICDREIYIRDPSEGESILPSIAKDYPDMIVVDYTVPDAVNANAELYCKLGLPFVMGTTGGNRQLLHKTVEDANVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYKLEVMESHQATKLDISGTAKAVISCFQKLGVSFNLNEVKQVRDPQEQLTLVGVPEEHLSGHAFHMYHLTSPDETVSFEFQHNVCGRSIYAEGTVDAALFLHKKIQSGANKKLYDMIDVLREGNMR 343          
BLAST of CX069933 vs. ExPASy Swiss-Prot
Match: DAPB2_ORYSJ (Probable dihydrodipicolinate reductase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=DAPB2 PE=2 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 2.171e-96
Identity = 167/228 (73.25%), Postives = 205/228 (89.91%), Query Frame = -3
Query:  111 EIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMDQIQMIRDPKQQLEMVGVPEEHLPGHAFHMYHLTSPDQTVSFEFQHNVCGRSIYAEGTVDAVLFLSKKVQLKADKRIYNMIDVLREGNMR 794
            +++++G S RE VL+SV D++P+++VVDYT P +VN NAELY K+G+PFVMGTTGGDR  L++++++SN YA+ISPQMGKQVVAFLAAMEIMAEQFPGAFSGY L+VLESHQAGKLD SGTAKAVI+CF+KLGVS+DM+++  IRDP+QQLEMVGVPEEH+ GHAFH+YHLTSPD +VSFEFQHNVCGRSIYAEG+VDA +FL +KV+    KRIY+MIDVLREG+MR
Sbjct:   98 DVRIYGPSAREDVLSSVIDEFPDVVVVDYTAPDSVNANAELYCKLGLPFVMGTTGGDRQLLYKSVQDSNNYALISPQMGKQVVAFLAAMEIMAEQFPGAFSGYHLEVLESHQAGKLDISGTAKAVIACFEKLGVSYDMNRMVKIRDPEQQLEMVGVPEEHIEGHAFHLYHLTSPDDSVSFEFQHNVCGRSIYAEGSVDAAMFLHRKVRSNDSKRIYDMIDVLREGSMR 325          
The following BLAST results are available for this feature:
BLAST of CX069933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DAPB1_ARATH7.426e-11384.05Dihydrodipicolinate reductase 1, chloroplastic OS=... [more]
DAPB2_ARATH3.685e-11283.19Dihydrodipicolinate reductase 2, chloroplastic OS=... [more]
DAPB1_ORYSJ1.112e-10075.43Probable dihydrodipicolinate reductase 1, chloropl... [more]
DAPB2_ORYSJ2.171e-9673.25Probable dihydrodipicolinate reductase 2, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_13G04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G04-M7-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069933 ID=CX069933; Name=CX069933; organism=Citrus sinensis; type=EST; length=808bp
TTTTTTTACTAATCCAAAATTGCATTGCACGTTTCATCATAATCCCAAAA
ATGTTGAGCGAAGAATGTACTAAATACTAATACAAGGAACATAGCTAAAA
CAAAATTTTAACGCATGTTTCCCTCTCGCAAGACATCTATCATGTTGTAG
ATACGCTTGTCTGCCTTCAACTGAACCTTCTTAGAAAGGAAAAGCACAGC
ATCAACAGTCCCCTCTGCGTAAATTGATCTCCCGCAAACATTATGCTGAA
ATTCAAAAGAAACTGTTTGATCAGGTGATGTCAAATGGTACATATGGAAT
GCATGACCAGGTAAATGCTCCTCTGGAACTCCCACCATCTCAAGTTGTTG
CTTGGGATCCCGAATCATTTGTATCTGATCCATATCAAAAGACACCCCTA
GTTTCTGAAAGCATGAGATAACAGCTTTGGCAGTTCCAGATGTGTCCAAT
TTACCAGCTTGATGGGACTCCAACACCTGCAAAGAATACCCGGAGAAGGC
TCCAGGAAATTGCTCAGCCATTATTTCCATAGCTGCAAGGAATGCCACAA
CTTGTTTTCCCATTTGTGGGGATATCACGGCATAAACATTTGAATTTTCT
ATTGTCTCATGCAATCTGACCCTGTCTCCACCAGTGGTTCCCATAACAAA
GGGCACTCCAACTTTGGAATATAGCTCTGCATTACCATTCACAGCAGCAG
GCACAGTATAGTCCACAACGATCATGTTTGGGTATTTATCAAAGACAGAT
GCAAGTACACTTTCCCTATCAGAAAGACCATGAACCTGGATCTCTTTCCC
GCACACTT
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