CX069932

Overview
NameCX069932
Unique NameCX069932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069932 vs. ExPASy Swiss-Prot
Match: DAPB1_ARATH (Dihydrodipicolinate reductase 1, chloroplastic OS=Arabidopsis thaliana GN=DAPB1 PE=2 SV=2)

HSP 1 Score: 315.079 bits (806), Expect = 3.234e-85
Identity = 162/238 (68.07%), Postives = 196/238 (82.35%), Query Frame = 3
Query:  147 SSRINRQSSNSGNGNVAFSRKRSL-VPPVLSMSATGASTKEHLETPMSKNLHIPIMVNSCTGKMGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMD 857
            +SR N+     G G V+F    +  +P VLSM+A   S +E +++ +  N  I IMVN C+GKMGKAVIKAAD+AG+ +VP+SFG+  E GQ+VEVCGKEI VHG ++RE VL+SVF+K+P +IVVDYT+P+AVN NAELYSKVGVPFVMGTTGGDR +L+ET+E + +YAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSL V+ESHQA KLD SGTAKAVISCFQ+LGVS+DMD
Sbjct:   22 ASRTNQTVGKYGKGRVSFMGIGTRRLPVVLSMTAMADSGEEAVKSVLPGN-GISIMVNGCSGKMGKAVIKAADSAGVNIVPISFGSAGEDGQRVEVCGKEITVHGPTEREKVLSSVFEKHPELIVVDYTIPSAVNDNAELYSKVGVPFVMGTTGGDRNKLYETVEEAKIYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLDVMESHQASKLDASGTAKAVISCFQELGVSYDMD 258          
BLAST of CX069932 vs. ExPASy Swiss-Prot
Match: DAPB2_ARATH (Dihydrodipicolinate reductase 2, chloroplastic OS=Arabidopsis thaliana GN=DAPB2 PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.605e-84
Identity = 162/241 (67.22%), Postives = 191/241 (79.25%), Query Frame = 3
Query:  138 FTGSSRINRQSSNSGNGNVAF-SRKRSLVPPVLSMSATGASTKEHLETPMSKNLHIPIMVNSCTGKMGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMD 857
            F+ SSR N+       G V+F    +   P VLSM  +   T E     ++    I IMVN C+GKMGKAVIKAAD+AG+ +VP SFG+ EE+GQ VEVCGKEI VHG ++RE VL+SVF+KYP +IVVDYT+P+AVN NAELY KVGVPFVMGTTGGDR RL++T+E S +YAVISPQMGKQVVAFLAAMEIM+EQFPGAF+GYSL+V+ESHQA KLD SGTAKAVISCFQKLGVS+DMD
Sbjct:   22 FSFSSRTNQMVPLGFKGRVSFIGNVKRCFPVVLSMGKS--ETFEEAGNSVAPGNGISIMVNGCSGKMGKAVIKAADSAGVNIVPTSFGSVEEAGQTVEVCGKEILVHGPTEREKVLSSVFEKYPELIVVDYTIPSAVNDNAELYGKVGVPFVMGTTGGDRTRLYKTVEESKIYAVISPQMGKQVVAFLAAMEIMSEQFPGAFAGYSLEVMESHQASKLDASGTAKAVISCFQKLGVSYDMD 260          
BLAST of CX069932 vs. ExPASy Swiss-Prot
Match: DAPB1_ORYSJ (Probable dihydrodipicolinate reductase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=DAPB1 PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.840e-73
Identity = 143/213 (67.14%), Postives = 171/213 (80.28%), Query Frame = 3
Query:  225 PVLSMSATGASTKEHLET-PMSKNLH-IPIMVNSCTGKMGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMD 857
            P+  +S T A   + LE+ P +   H  PI+VNSCTGKMGKAV +AA +AGL+LVPVSF   E    KVE+C +EI +   S+ ES+L S+   YP+MIVVDYTVP AVN NAELY K+G+PFVMGTTGG+R  LH+T+E++NVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGY L+V+ESHQA KLD SGTAKAVISCFQKLGVSF+++
Sbjct:   42 PMARLSITNALASQSLESAPAAPPKHSFPILVNSCTGKMGKAVAEAAVSAGLQLVPVSFSAIEVPDGKVEICDREIYIRDPSEGESILPSIAKDYPDMIVVDYTVPDAVNANAELYCKLGLPFVMGTTGGNRQLLHKTVEDANVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYKLEVMESHQATKLDISGTAKAVISCFQKLGVSFNLN 254          
BLAST of CX069932 vs. ExPASy Swiss-Prot
Match: DAPB2_ORYSJ (Probable dihydrodipicolinate reductase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=DAPB2 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.363e-66
Identity = 121/185 (65.41%), Postives = 156/185 (84.32%), Query Frame = 3
Query:  303 PIMVNSCTGKMGKAVIKAADAAGLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTGGDRVRLHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDTSGTAKAVISCFQKLGVSFDMD 857
            PI+VN CTGKMG +V +A  ++GL LVP+SF + +   + V V   +++++G S RE VL+SV D++P+++VVDYT P +VN NAELY K+G+PFVMGTTGGDR  L++++++SN YA+ISPQMGKQVVAFLAAMEIMAEQFPGAFSGY L+VLESHQAGKLD SGTAKAVI+CF+KLGVS+DM+
Sbjct:   52 PILVNGCTGKMGLSVAEAVTSSGLHLVPISFSSRDTLDRTVRVGHTDVRIYGPSAREDVLSSVIDEFPDVVVVDYTAPDSVNANAELYCKLGLPFVMGTTGGDRQLLYKSVQDSNNYALISPQMGKQVVAFLAAMEIMAEQFPGAFSGYHLEVLESHQAGKLDISGTAKAVIACFEKLGVSYDMN 236          
BLAST of CX069932 vs. ExPASy Swiss-Prot
Match: DAPB_CYAP7 (Dihydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 7424) GN=dapB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.886e-11
Identity = 63/201 (31.34%), Postives = 96/201 (47.76%), Query Frame = 3
Query:  282 MSKNLHIPIMVNSCTGKMGKAVIKAADAA-------GLELVPVSFGTEEESGQKVEVCGKEIQVHGLSDRESVLASVFDKYPNMIVVDYTVPAAVNGNAELYSKVGVPFVMGTTG--GDRVR-LHETIENSNVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYSLQVLESHQAGKLDT-SGTAKAVISCFQKLGVSFD 851
            M+K   IP++VN   GKMGK VIKA   A        ++L P   G  E++G+ V  CG  ++V  L D +SVL     +    ++VD+T P  V  N       GV  V+GTTG  G++++ L E  E ++   +I P     ++    A    ++ F        ++++E H   K D  SGTA        +LG SF+
Sbjct:    1 MTKESPIPVVVNGAAGKMGKEVIKAVSQAEDMMLVGAVDLNPKYRG--EDAGE-VAGCG-PVEVPILDDLQSVLVLATQEKVQGVMVDFTHPDGVYDNIRSAIAYGVRPVVGTTGLSGEQIKDLGEFAEKASTGCLIVPNFSIGMILLQQAAVQASQYFD------HVEIIELHHNQKADAPSGTAIKTAEMLSELGKSFN 191          
The following BLAST results are available for this feature:
BLAST of CX069932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
DAPB1_ARATH3.234e-8568.07Dihydrodipicolinate reductase 1, chloroplastic OS=... [more]
DAPB2_ARATH1.605e-8467.22Dihydrodipicolinate reductase 2, chloroplastic OS=... [more]
DAPB1_ORYSJ2.840e-7367.14Probable dihydrodipicolinate reductase 1, chloropl... [more]
DAPB2_ORYSJ3.363e-6665.41Probable dihydrodipicolinate reductase 2, chloropl... [more]
DAPB_CYAP76.886e-1131.34Dihydrodipicolinate reductase OS=Cyanothece sp. (s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_13G04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G04-M7-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069932 ID=CX069932; Name=CX069932; organism=Citrus sinensis; type=EST; length=858bp
CCTAGCAGCCGATTTTGTATTTTTTTAATCATTCTTATTACAAACCCTTT
ACAGAATTCTCTTTCTTTCTCAAGATAATGGCATCTTTGCTCAAAGCTCC
AACCAACAACACTTTGCAACTGCATAAGTTGGATTTGTTTACTGGAAGCA
GCAGAATCAACAGACAGAGTAGTAATAGTGGTAATGGGAATGTTGCTTTC
TCGAGAAAAAGATCTTTGGTGCCACCGGTTCTGTCAATGTCAGCAACAGG
AGCATCAACTAAAGAACATTTGGAAACACCCATGTCCAAAAATTTGCATA
TTCCCATCATGGTAAATAGTTGTACTGGAAAAATGGGGAAGGCTGTTATC
AAGGCTGCAGATGCTGCAGGACTTGAGCTGGTTCCTGTATCATTTGGCAC
AGAAGAGGAATCTGGGCAAAAGGTGGAAGTGTGCGGGAAAGAGATCCAGG
TTCATGGTCTTTCTGATAGGGAAAGTGTACTTGCATCTGTCTTTGATAAA
TACCCAAACATGATCGTTGTGGACTATACTGTGCCTGCTGCTGTGAATGG
TAATGCAGAGCTATATTCCAAAGTTGGAGTGCCCTTTGTTATGGGAACCA
CTGGTGGAGACAGGGTCAGATTGCATGAGACAATAGAAAATTCAAATGTT
TATGCCGTGATATCCCCACAAATGGGAAAACAAGTTGTGGCATTCCTTGC
AGCTATGGAAATAATGGCTGAGCAATTTCCTGGAGCCTTCTCCGGGTATT
CTTTGCAGGTGTTGGAGTCCCATCAAGCTGGTAAATTGGACACATCTGGA
ACTGCCAAAGCTGTTATCTCATGCTTTCAGAAACTAGGGGTGTCTTTTGA
TATGGATC
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