CX069926

Overview
NameCX069926
Unique NameCX069926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069926 vs. ExPASy Swiss-Prot
Match: R51A2_MAIZE (DNA repair protein RAD51 homolog B OS=Zea mays GN=RAD51B PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.143e-28
Identity = 74/111 (66.67%), Postives = 79/111 (71.17%), Query Frame = -3
Query:   12 KASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAGXXXXXXXXXXXXXXXSCQCFCERASYVFFMAASKLVPLGFTSATQLHAQRLEIIQITSGSR 344
            +ASGIAALDVKKLKDAGLCTVESVAYSPRK+LLQIKGISEAKVDKIIE                                AASKLVPLGFTSA+QLHAQRLEIIQ+T+GSR
Sbjct:   30 QASGIAALDVKKLKDAGLCTVESVAYSPRKDLLQIKGISEAKVDKIIE--------------------------------AASKLVPLGFTSASQLHAQRLEIIQLTTGSR 108          
BLAST of CX069926 vs. ExPASy Swiss-Prot
Match: RAD51_SOLLC (DNA repair protein RAD51 homolog OS=Solanum lycopersicum GN=RAD51 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.950e-28
Identity = 74/111 (66.67%), Postives = 78/111 (70.27%), Query Frame = -3
Query:   12 KASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAGXXXXXXXXXXXXXXXSCQCFCERASYVFFMAASKLVPLGFTSATQLHAQRLEIIQITSGSR 344
            +ASGIAALDVKKLKDAGLCTVESV Y+PRKELLQIKGISEAKVDKIIE                                AASKLVPLGFTSA+QLHAQRLEIIQITSGS+
Sbjct:   32 QASGIAALDVKKLKDAGLCTVESVVYAPRKELLQIKGISEAKVDKIIE--------------------------------AASKLVPLGFTSASQLHAQRLEIIQITSGSK 110          
BLAST of CX069926 vs. ExPASy Swiss-Prot
Match: RAD51_ARATH (DNA repair protein RAD51 homolog 1 OS=Arabidopsis thaliana GN=RAD51 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.935e-26
Identity = 67/111 (60.36%), Postives = 77/111 (69.37%), Query Frame = -3
Query:   12 KASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAGXXXXXXXXXXXXXXXSCQCFCERASYVFFMAASKLVPLGFTSATQLHAQRLEIIQITSGSR 344
            +A+GIA++DVKKL+DAGLCTVE VAY+PRK+LLQIKGIS+AKVDKI+E                                AASKLVPLGFTSA+QLHAQR EIIQITSGSR
Sbjct:   32 QAAGIASVDVKKLRDAGLCTVEGVAYTPRKDLLQIKGISDAKVDKIVE--------------------------------AASKLVPLGFTSASQLHAQRQEIIQITSGSR 110          
BLAST of CX069926 vs. ExPASy Swiss-Prot
Match: R51A1_MAIZE (DNA repair protein RAD51 homolog A OS=Zea mays GN=RAD51A PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.183e-25
Identity = 68/111 (61.26%), Postives = 77/111 (69.37%), Query Frame = -3
Query:   12 KASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAGXXXXXXXXXXXXXXXSCQCFCERASYVFFMAASKLVPLGFTSATQLHAQRLEIIQITSGSR 344
            +ASGIAALDVKKLKD+GL TVE+VAY+PRK+LLQIKGISEAK DKIIE                                AASK+VPLGFTSA+QLHAQRLEIIQ+T+GSR
Sbjct:   30 QASGIAALDVKKLKDSGLHTVEAVAYTPRKDLLQIKGISEAKADKIIE--------------------------------AASKIVPLGFTSASQLHAQRLEIIQVTTGSR 108          
BLAST of CX069926 vs. ExPASy Swiss-Prot
Match: RAD51_HUMAN (DNA repair protein RAD51 homolog 1 OS=Homo sapiens GN=RAD51 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.884e-17
Identity = 52/114 (45.61%), Postives = 68/114 (59.65%), Query Frame = -3
Query:   12 ARHKASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAGXXXXXXXXXXXXXXXSCQCFCERASYVFFMAASKLVPLGFTSATQLHAQRLEIIQITSGSR 353
            +R +  GI A DVKKL++AG  TVE+VAY+P+KEL+ IKGISEAK DKI+                                  A+KLVP+GFT+AT+ H +R EIIQIT+GS+
Sbjct:   26 SRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKIL--------------------------------AEAAKLVPMGFTTATEFHQRRSEIIQITTGSK 107          
BLAST of CX069926 vs. ExPASy Swiss-Prot
Match: RAD51_CANFA (DNA repair protein RAD51 homolog 1 OS=Canis familiaris GN=RAD51 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.884e-17
Identity = 52/114 (45.61%), Postives = 68/114 (59.65%), Query Frame = -3
Query:   12 ARHKASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAGXXXXXXXXXXXXXXXSCQCFCERASYVFFMAASKLVPLGFTSATQLHAQRLEIIQITSGSR 353
            +R +  GI A DVKKL++AG  TVE+VAY+P+KEL+ IKGISEAK DKI+                                  A+KLVP+GFT+AT+ H +R EIIQIT+GS+
Sbjct:   26 SRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELISIKGISEAKADKIL--------------------------------TEAAKLVPMGFTTATEFHQRRSEIIQITTGSK 107          
BLAST of CX069926 vs. ExPASy Swiss-Prot
Match: RAD51_BOVIN (DNA repair protein RAD51 homolog 1 OS=Bos taurus GN=RAD51 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.884e-17
Identity = 52/114 (45.61%), Postives = 68/114 (59.65%), Query Frame = -3
Query:   12 ARHKASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAGXXXXXXXXXXXXXXXSCQCFCERASYVFFMAASKLVPLGFTSATQLHAQRLEIIQITSGSR 353
            +R +  GI A DVKKL++AG  TVE+VAY+P+KEL+ IKGISEAK DKI+                                  A+KLVP+GFT+AT+ H +R EIIQIT+GS+
Sbjct:   26 SRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKIL--------------------------------TEAAKLVPMGFTTATEFHQRRSEIIQITTGSK 107          
BLAST of CX069926 vs. ExPASy Swiss-Prot
Match: RAD51_MOUSE (DNA repair protein RAD51 homolog 1 OS=Mus musculus GN=Rad51 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.685e-17
Identity = 52/114 (45.61%), Postives = 68/114 (59.65%), Query Frame = -3
Query:   12 ARHKASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAGXXXXXXXXXXXXXXXSCQCFCERASYVFFMAASKLVPLGFTSATQLHAQRLEIIQITSGSR 353
            +R +  GI A DVKKL++AG  TVE+VAY+P+KEL+ IKGISEAK DKI+                                  A+KLVP+GFT+AT+ H +R EIIQIT+GS+
Sbjct:   26 SRLEQCGINANDVKKLEEAGYHTVEAVAYAPKKELINIKGISEAKADKIL--------------------------------TEAAKLVPMGFTTATEFHQRRSEIIQITTGSK 107          
BLAST of CX069926 vs. ExPASy Swiss-Prot
Match: RAD51_CHICK (DNA repair protein RAD51 homolog 1 OS=Gallus gallus GN=RAD51A PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.685e-17
Identity = 53/114 (46.49%), Postives = 68/114 (59.65%), Query Frame = -3
Query:   12 ARHKASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAGXXXXXXXXXXXXXXXSCQCFCERASYVFFMAASKLVPLGFTSATQLHAQRLEIIQITSGSR 353
            +R +  GI A DVKKL++AG  TVESVA++P+KELL IKGISEAK DKI+                                  A+KLVP+GFT+AT+ H +R EIIQIT+GS+
Sbjct:   26 SRLEQCGINANDVKKLEEAGYHTVESVAHAPKKELLNIKGISEAKADKIL--------------------------------AEAAKLVPMGFTTATEFHQRRSEIIQITTGSK 107          
BLAST of CX069926 vs. ExPASy Swiss-Prot
Match: RAD51_RABIT (DNA repair protein RAD51 homolog 1 OS=Oryctolagus cuniculus GN=RAD51 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.920e-16
Identity = 51/114 (44.74%), Postives = 67/114 (58.77%), Query Frame = -3
Query:   12 ARHKASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAGXXXXXXXXXXXXXXXSCQCFCERASYVFFMAASKLVPLGFTSATQLHAQRLEIIQITSGSR 353
            +R +  GI A DVKKL++AG  T E+VAY+P+KEL+ IKGISEAK DKI+                                  A+KLVP+GFT+AT+ H +R EIIQIT+GS+
Sbjct:   26 SRLEQCGINANDVKKLEEAGFHTEEAVAYAPKKELINIKGISEAKADKIL--------------------------------TEAAKLVPMGFTTATEFHQRRSEIIQITTGSK 107          
The following BLAST results are available for this feature:
BLAST of CX069926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
R51A2_MAIZE1.143e-2866.67DNA repair protein RAD51 homolog B OS=Zea mays GN=... [more]
RAD51_SOLLC1.950e-2866.67DNA repair protein RAD51 homolog OS=Solanum lycope... [more]
RAD51_ARATH6.935e-2660.36DNA repair protein RAD51 homolog 1 OS=Arabidopsis ... [more]
R51A1_MAIZE1.183e-2561.26DNA repair protein RAD51 homolog A OS=Zea mays GN=... [more]
RAD51_HUMAN5.884e-1745.61DNA repair protein RAD51 homolog 1 OS=Homo sapiens... [more]
RAD51_CANFA5.884e-1745.61DNA repair protein RAD51 homolog 1 OS=Canis famili... [more]
RAD51_BOVIN5.884e-1745.61DNA repair protein RAD51 homolog 1 OS=Bos taurus G... [more]
RAD51_MOUSE7.685e-1745.61DNA repair protein RAD51 homolog 1 OS=Mus musculus... [more]
RAD51_CHICK7.685e-1746.49DNA repair protein RAD51 homolog 1 OS=Gallus gallu... [more]
RAD51_RABIT2.920e-1644.74DNA repair protein RAD51 homolog 1 OS=Oryctolagus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F12-K23-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069926 ID=CX069926; Name=CX069926; organism=Citrus sinensis; type=EST; length=811bp
CCGCCGCCCCCCCTCGAGCCAGATGTTATTTGAATTATCTCAAGCCTCTG
GGCATGGAGTTGGGTAGCACTGGTGAAACCCAGGGGCACAAGTTTGGAAG
CTGCCATGAAAAAAACATACGAAGCTCTTTCACAAAAGCATTGACAAGAA
TGAGCTGAAAAAAAAAAGAGTCAGTGTGGTAAAGACAAAGACAAGCCTGC
TTCAATGATCTTGTCAACTTTTGCTTCGCTGATTCCTTTAATTTGCAGAA
GTTCTTTCCTGGGGGAGTAAGCAACAGATTCAACTGTGCAAAGACCCGCA
TCTTTCAGCTTCTTGACGTCAAGAGCAGCAATGCCTGATGCCTTGTGTCG
AGCATTAGAAGAACCAAAAATGTTATTAAGCATAAAAATGCATGTGAAAA
CAAACCATCCAAATTGGCCAAGTCAGAATATTGATAAACAACAGCTTAGT
TCAAAGATTAAAAACAAATTCATCCATGAGCACTAATTTGAGCAACCCAA
GCAAAAGACTAGGCCGAGATTAGGGTAAGTCGTGTCTTGAAGGACACCAC
ACAAGAGTGAAAATCTTATAAAGAATTAAATAAACGCTTCAATTTCACAA
TATAGGAAACAATTACAAGAAAATTAACCCTAGAATTCAATAAAAAGAAA
TAACAGCTTTCATCACATTCAAGGAAACTAGAGTAAACCAATCAAAAATG
CAGCTAAAGAAGCCATCTTTTTAGCAAAATAAAAACAACCCATATCAATT
ACATAATCAAGGAAAATATTTTTCAAGTGACTTCAGAAGGGAAAAAAGAA
AAAAAAAAACT
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