CX069924

Overview
NameCX069924
Unique NameCX069924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12402 contig Csv1_Contig12402:455..1102. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069924 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.735e-49
Identity = 93/124 (75.00%), Postives = 106/124 (85.48%), Query Frame = 2
Query:    2 SAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVAXXXXXXXXXXXXXAFVCHGLTLPTCLQ 373
            SAQAY MNDEFSRVLSQQME+YS+DPNADR++RIKGEMSQVRNVMIENIDKVL+RG+RLELLVDKT NMQGNTFRFRKQARR+R+ +WWRNVKLT+A             AFVCHG +LP+C +
Sbjct:   98 SAQAYSMNDEFSRVLSQQMEFYSNDPNADRMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDKTENMQGNTFRFRKQARRYRTIMWWRNVKLTIALILVLALVVYIAMAFVCHGPSLPSCFK 221          
BLAST of CX069924 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 9.726e-48
Identity = 92/123 (74.80%), Postives = 103/123 (83.74%), Query Frame = 2
Query:    2 SAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVAXXXXXXXXXXXXXAFVCHGLTLPTCL 370
            +A AY MN+EFSRVLSQQ++YYS+DPNADRINRIKGEM+QVR VMIENIDKVL+RG+RLELLVDKTANMQGNTFRFRKQARRFRS VWWRN KLTV              AF+CHG TLP+C+
Sbjct:   97 TALAYAMNEEFSRVLSQQIDYYSNDPNADRINRIKGEMNQVRGVMIENIDKVLDRGERLELLVDKTANMQGNTFRFRKQARRFRSNVWWRNCKLTVLLILLLLVIIYIAVAFLCHGPTLPSCI 219          
BLAST of CX069924 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.086e-46
Identity = 88/123 (71.54%), Postives = 101/123 (82.11%), Query Frame = 2
Query:    2 SAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVAXXXXXXXXXXXXXAFVCHGLTLPTCL 370
            SAQAY MNDEFSRVL+QQ+EYYS+DPNAD I+RIKGEM+QVR+VMIENID +L+RG+RLELLVDKTANMQGNTFRFRKQ RRF +TVWWRN KLT+              AF CHG TLP+C+
Sbjct:   97 SAQAYAMNDEFSRVLNQQIEYYSNDPNADTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTRRFNNTVWWRNCKLTLLLILVLLVIIYIGVAFACHGPTLPSCV 219          
BLAST of CX069924 vs. ExPASy Swiss-Prot
Match: VA714_ARATH (Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.120e-34
Identity = 65/122 (53.28%), Postives = 90/122 (73.77%), Query Frame = 2
Query:    2 SAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVAXXXXXXXXXXXXXAFVCHGLTLPTC 367
            +A AY MNDEFSRVL QQME++S +P+ D +NR++GE+S++R+VM+ENI+K++ERGDR+ELLVDKTA MQ ++F FRKQ++R R  +W +N KL V              A  C G+TLP+C
Sbjct:   98 NAPAYAMNDEFSRVLHQQMEFFSSNPSVDTLNRVRGEVSEIRSVMVENIEKIMERGDRIELLVDKTATMQDSSFHFRKQSKRLRRALWMKNAKLLVLLTCLIVFLLYIIIASFCGGITLPSC 219          
BLAST of CX069924 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.031e-18
Identity = 39/124 (31.45%), Postives = 74/124 (59.68%), Query Frame = 2
Query:    2 SAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVAXXXXXXXXXXXXXAFVCHGLTLPTCLQ 373
            +A  Y MN EFS VL+ Q++++S++ + D++   + ++ +++ +M+ NID V +RG+RLELL+DKT N+  ++  F+  +R     +  +N+KLT+              + +C G T P C++
Sbjct:   96 TALPYAMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIKLTIIIIIVSIVFIYIIVSLLCGGFTWPNCVK 219          
BLAST of CX069924 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.049e-17
Identity = 40/124 (32.26%), Postives = 72/124 (58.06%), Query Frame = 2
Query:    2 SAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVAXXXXXXXXXXXXXAFVCHGLTLPTCLQ 373
            +A  Y MN EFS VL+ Q++Y+S+    D++   + ++ +++ +M+ NID V +RG++LELL+DKT N+  ++  F+  +R     +  +N+KLT+              +  C GL  P+C+Q
Sbjct:   96 TALPYAMNSEFSSVLAAQLKYHSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIVSIVIIYIIVSAACGGLAWPSCVQ 219          
BLAST of CX069924 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.370e-17
Identity = 41/124 (33.06%), Postives = 74/124 (59.68%), Query Frame = 2
Query:    2 SAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVAXXXXXXXXXXXXXAFVCHGLTLPTCLQ 373
            +A  Y MN EFS VL+ Q++++S++ + DR+   + ++ +++ +M+ NID V +RG+RLELL+DKT N+  ++  F+  +R     +  +NVKLT               + +C G T P+C++
Sbjct:   96 TALPYAMNSEFSSVLAAQLKHHSENQSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCVKNVKLTAIIVVVSIVFIYIIVSPLCGGFTWPSCVK 219          
BLAST of CX069924 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.789e-17
Identity = 36/95 (37.89%), Postives = 69/95 (72.63%), Query Frame = 2
Query:    2 SAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENI-DKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKL 283
            +A AYGMN +FSR L   M++YS+    D ++R   E+ +V+N+++ +I  ++L+RG+++E+LV++T  +   +F+F+KQ+++ +  +WW+NVKL
Sbjct:   96 TAIAYGMNSDFSRTLENLMDHYSNTTRVDTMSRTMAEIDEVKNILVSDIAPQLLKRGEKIEMLVERTDTLNQQSFKFKKQSKQLKCAMWWKNVKL 190          
BLAST of CX069924 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 3.986e-17
Identity = 39/124 (31.45%), Postives = 74/124 (59.68%), Query Frame = 2
Query:    2 SAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVAXXXXXXXXXXXXXAFVCHGLTLPTCLQ 373
            +A  Y MN EFS VL+ Q++++S++   D++   + ++ +++ +M+ NID V +RG+RLELL+DKT N+  ++  F+  +R     +  +N+KLT+              + +C G T P+C++
Sbjct:   96 TALPYAMNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIVSIVFIYIIVSPLCGGFTWPSCVK 219          
BLAST of CX069924 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 3.986e-17
Identity = 39/124 (31.45%), Postives = 74/124 (59.68%), Query Frame = 2
Query:    2 SAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVAXXXXXXXXXXXXXAFVCHGLTLPTCLQ 373
            +A  Y MN EFS VL+ Q++++S++   D++   + ++ +++ +M+ NID V +RG+RLELL+DKT N+  ++  F+  +R     +  +N+KLT+              + +C G T P+C++
Sbjct:   96 TALPYAMNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIVSIVFIYIIVSPLCGGFTWPSCVK 219          
The following BLAST results are available for this feature:
BLAST of CX069924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
VA713_ARATH6.735e-4975.00Vesicle-associated membrane protein 713 OS=Arabido... [more]
VA711_ARATH9.726e-4874.80Vesicle-associated membrane protein 711 OS=Arabido... [more]
VA712_ARATH4.086e-4671.54Vesicle-associated membrane protein 712 OS=Arabido... [more]
VA714_ARATH6.120e-3453.28Vesicle-associated membrane protein 714 OS=Arabido... [more]
VAMP7_MOUSE8.031e-1831.45Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_CHICK1.049e-1732.26Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAMP7_RAT1.370e-1733.06Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VAM7B_DICDI1.789e-1737.89Vesicle-associated membrane protein 7B OS=Dictyost... [more]
VAMP7_PONAB3.986e-1731.45Vesicle-associated membrane protein 7 OS=Pongo abe... [more]
VAMP7_HUMAN3.986e-1731.45Vesicle-associated membrane protein 7 OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F10-K19-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069924 ID=CX069924; Name=CX069924; organism=Citrus sinensis; type=EST; length=648bp
TTCAGCCCAAGCTTATGGCATGAATGATGAATTTTCAAGGGTCTTGAGCC
AGCAAATGGAGTATTATTCAGATGACCCAAATGCTGATAGGATAAATAGA
ATTAAAGGTGAAATGAGCCAGGTAAGAAATGTCATGATAGAGAACATTGA
CAAAGTTTTAGAAAGAGGTGACCGCTTGGAACTGTTGGTTGATAAAACTG
CTAATATGCAAGGAAACACGTTCCGCTTCAGAAAGCAGGCTAGGCGTTTC
AGAAGCACAGTATGGTGGAGAAACGTCAAGCTCACGGTTGCGCTGATTAT
CCTCATCCTCGTGATTGTTTATGTTGTCCTGGCTTTTGTTTGCCATGGAC
TTACTCTACCTACCTGCCTGCAGTGAGGGCTAAAGTGGAGTGGGATCTAA
ATTGTGTTCTTTTTCTTAGTTTGTTTCCCCCTTCTATATGGGTATGTGGG
ATTTTGCAGTCTCAGCTTTCTCCGCTGCTGCAATGAGAATTGAGAAGCAA
TCTTTGTGTGCATGCTTGTGTTAATGTCTCGCATGGAGATACAAACTAGT
TCATATTGTATGACTTGGTGAGTTTAAATTCATGAAAGACTAATTTTTTG
GTGTAAAATCTTAAACCCCGATGTCTCCATTAATATTTCCCCAAGGCT
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