CX069904

Overview
NameCX069904
Unique NameCX069904
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069904_ssr103 microsatellite CX069904_ssr103:103..112. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10695 contig Csv1_Contig10695:76..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX069904 vs. ExPASy Swiss-Prot
Match: FATB_GOSHI (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.675e-35
Identity = 80/127 (62.99%), Postives = 84/127 (66.14%), Query Frame = 2 
Query:  380 SVAKTKNLGSANLXXXXXXXXXXXLQVKANAQAPSKINGTSVGLTTPAESLKNGDISTSSPPPRTFINQLPDWSMXXXXXXXXXXXXEKQWMMLDWKPRRSDMLVDPFGIGKIVQDGFIFRQNFSIR 760
            S +K K LGS              LQVKANAQAP KINGT V  TTP E  KN D   SSPPPRTFINQLPDWSM            EKQWMMLDWKPRR DM++DPFGIGKIVQDG +F QNFSIR
Sbjct:   20 SDSKNKKLGSIK---SKPSVSSGSLQVKANAQAPPKINGT-VASTTPVEGSKNDD-GASSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRPDMVIDPFGIGKIVQDGLVFSQNFSIR 141
[Close]
BLAST of CX069904 vs. ExPASy Swiss-Prot
Match: FATB_CUPHO (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cuphea hookeriana GN=FATB1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.666e-32
Identity = 68/103 (66.02%), Postives = 76/103 (73.79%), Query Frame = 2 
Query:  452 LQVKANAQAPSKINGTSVGLTTPAESLKNGDISTSSPPPRTFINQLPDWSMXXXXXXXXXXXXEKQWMMLDWKPRRSDMLVDPFGIGKIVQDGFIFRQNFSIR 760
            LQVKANA AP KING+ VGL +    LK  + + S+PPPRTFINQLPDWSM            EKQWMMLDWKP+R DMLVDPFG+G IVQDG +FRQNFSIR
Sbjct:   45 LQVKANASAPPKINGSPVGLKSGG--LKTQEDAHSAPPPRTFINQLPDWSMLLAAITTVFLAAEKQWMMLDWKPKRPDMLVDPFGLGSIVQDGLVFRQNFSIR 145
The following BLAST results are available for this feature:
BLAST of CX069904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FATB_GOSHI9.675e-3562.99Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_CUPHO7.666e-3266.02Myristoyl-acyl carrier protein thioesterase, chlor... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_13E12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13E12-I23-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069904 ID=CX069904; Name=CX069904; organism=Citrus sinensis; type=EST; length=762bp
CTTTTTTGTTTTTCTCTTTAATTCGATTTTTTCAAAGCGAAACTTAACAA
AATAATGTTTAAAAAAAAGAGATGAAAGTTCTACTCAAACGAAAAAGGTA
GCGAGAGAGAGATCGTAAACCCTAGAAGTTAGTGAGAAGCATCCGCATTT
GCATTCGCTCGCAGATCCAAATTGAAGAAGCAAATGAGCTTTTATCATCT
TTGTTTATTCTTTTTTCACAGTTTTGTGTAATTTTTGGTGGCCGGATTTT
CTTCGCTATTTTGTTACTCGTAAAATTAAGGATTACTAGGGCCCTGATCT
GTGGTTTACTCTACGGTTCAAGATGGTTGCTACTGCCGCAGCTTCTGCGT
TCTTCCCAGTTTCCTCACCATCTGGGGATTCTGTTGCAAAGACCAAAAAT
CTCGGATCTGCTAATCTGGGAGGTATTAAGTCAAAATCCTCTTCTGGGAG
TTTGCAGGTTAAGGCTAATGCGCAAGCACCTTCCAAGATAAATGGTACTT
CAGTTGGTTTGACAACACCAGCAGAAAGTTTGAAGAATGGTGATATCTCC
ACGTCATCACCTCCTCCTAGGACTTTTATTAACCAGTTACCTGACTGGAG
TATGCTTCTTGCTGCTATAACAACAATCTTCTTGGCAGCAGAGAAGCAGT
GGATGATGCTTGATTGGAAACCAAGGCGATCTGACATGCTTGTGGACCCA
TTTGGGATTGGGAAAATAGTTCAGGATGGTTTCATTTTCCGGCAAAATTT
CTCAATTAGATC
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