DR404105

Overview
NameDR404105
Unique NameDR404105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: TRXM3_ARATH (Thioredoxin M-type 3, chloroplastic OS=Arabidopsis thaliana GN=At2g15570 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.169e-48
Identity = 98/163 (60.12%), Postives = 117/163 (71.78%), Query Frame = 2
Query:  128 CFTSAHFAIPRVSSFPSHTPNKLSFPSH---FYAKNATFKAPNRSLSLKVLCVRESRAV-VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLKS 604
            CF    F   R  S PS      SF      F  + +   +    L L  LCVR+SRA  VT+ SWE S+L S+TPVLVEFY SWCGPCRMVHR+IDEIAG+YAG+L C+++N D DL +AE+YEIKAVPVVLLFKNGEKRE+++GTMPKEFYI+AIERVL S
Sbjct:   11 CFNPTRFHTARHISSPSRLFPVTSFSPRSLRFSDRRSLLSSSASRLRLSPLCVRDSRAAEVTQRSWEDSVLKSETPVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNCYLLNADNDLPVAEEYEIKAVPVVLLFKNGEKRESIMGTMPKEFYISAIERVLNS 173          
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: TRXM_ORYSJ (Thioredoxin M-type, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.145e-26
Identity = 51/104 (49.04%), Postives = 74/104 (71.15%), Query Frame = 2
Query:  293 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLKS 604
            V  + +W+  +L S+ PVLVEF+A WCGPCRM+  VIDE+A EY G+++C  VNTD    IA +Y I+++P VL+FKNGEK+E+V+G +PK      I++ + S
Sbjct:   69 VADEKNWDSMVLGSEAPVLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVIGAVPKTTLATIIDKYVSS 172          
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.064e-25
Identity = 47/102 (46.08%), Postives = 74/102 (72.55%), Query Frame = 2
Query:  293 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVL 598
            VV   SW++ ++ S+TPVLV+F+A WCGPCRM+  +IDE+A EYAG+++C+ +NTD     A  Y I+++P VL FKNGE++++V+G +PK      +E+ +
Sbjct:   71 VVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172          
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 6.900e-25
Identity = 50/120 (41.67%), Postives = 78/120 (65.00%), Query Frame = 2
Query:  239 APNRSLSLKVLCVRESRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVL 598
            AP RS+      VR     V  D+++  +L S  PVLV+F+A WCGPCR++  V+DEIAGEY  +L+C  +NTD    +A +Y I+++P +++FK G+K ET++G +PK   +  +E+ L
Sbjct:   25 APRRSV-----VVRAEAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 139          
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.537e-24
Identity = 56/147 (38.10%), Postives = 92/147 (62.59%), Query Frame = 2
Query:  173 PSHTPNKLSFPSHFYAKNATFKAPNRSLSLKVLCVRESRAV-----VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVL 598
            P+    K SFP+   + + +  +P +     V+C + S AV     V   SW++ +L S+ PV+V+F+A WCGPC+++  VIDE+A EY+G++  + +NTD    IA  Y I+++P VL FKNGE++E+++G +PK     +IE+ L
Sbjct:   36 PTFRGLKRSFPA--LSSSVSSSSPRQFRYSSVVC-KASEAVKEVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 179          
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: TRXM_MAIZE (Thioredoxin M-type, chloroplastic OS=Zea mays GN=TRM1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.008e-24
Identity = 48/104 (46.15%), Postives = 72/104 (69.23%), Query Frame = 2
Query:  293 VVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLKS 604
            V  + +W+  ++  +TPVLVEF+A WCGPCRM+  VIDE+A +YAG++ C  VNTD    +A  Y I+++P VL+FK GEK+E+V+G +PK      I++ + S
Sbjct:   63 VADEKNWDGLVMACETPVLVEFWAPWCGPCRMIAPVIDELAKDYAGKITCCKVNTDDSPNVASTYGIRSIPTVLIFKGGEKKESVIGAVPKSTLTTLIDKYIGS 166          
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: TRXM_WHEAT (Thioredoxin M-type, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.622e-24
Identity = 53/134 (39.55%), Postives = 85/134 (63.43%), Query Frame = 2
Query:  203 PSHFYAKNATFKAPNRSLSLKVLCVRESRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLKS 604
            PS + +     + P+R +  K   V +   V  + +W+  ++  ++PVLVEF+A WCGPCRM+  VIDE+A +Y G+++C  VNTD    IA  Y I+++P VL+FK+GEK+E+V+G +PK      I++ + S
Sbjct:   43 PSPYKSALVAARRPSRFVC-KCKNVVDEVIVADEKNWDNMVIACESPVLVEFWAPWCGPCRMIAPVIDELAKDYVGKIKCCKVNTDDCPNIASTYGIRSIPTVLMFKDGEKKESVIGAVPKTTLCTIIDKYIGS 175          
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: TRXM4_ARATH (Thioredoxin M-type 4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.622e-24
Identity = 44/101 (43.56%), Postives = 71/101 (70.30%), Query Frame = 2
Query:  296 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVL 598
            ++   W+  +L SD PVLVEF+A WCGPCRM+H ++D++A ++AG+ + + +NTD     A  Y I++VP V++FK GEK+++++G +P+E     IER L
Sbjct:   91 LSDSEWQTKVLESDVPVLVEFWAPWCGPCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGAVPRETLEKTIERFL 191          
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: THIO_GRIPA (Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.467e-22
Identity = 48/103 (46.60%), Postives = 72/103 (69.90%), Query Frame = 2
Query:  296 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLKS 604
            V   S+ + ++NS  PVLV+F+A WCGPCRM+   IDEIA +Y  +L+   VNTD + TIA +Y I+++P V++F NG+K +TVVG +PK   +  +++ LKS
Sbjct:    6 VIDTSFHEEVINSRQPVLVDFWAPWCGPCRMIASTIDEIAHDYKDKLKVVKVNTDQNPTIATEYGIRSIPTVMIFINGKKVDTVVGAVPKLTLLNTLQKHLKS 108          
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: THIO1_ANASP (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=trxA PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.467e-22
Identity = 46/103 (44.66%), Postives = 72/103 (69.90%), Query Frame = 2
Query:  290 AVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVL 598
            A VT  ++++ +L+SD PVLV+F+A WCGPCRMV  V+DEIA +Y G+++   VNTD +  +A  Y I+++P +++FK G+K + VVG +PK      +E+ L
Sbjct:    5 AQVTDSTFKQEVLDSDVPVLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
The following BLAST results are available for this feature:
BLAST of DR404105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
TRXM3_ARATH1.169e-4860.12Thioredoxin M-type 3, chloroplastic OS=Arabidopsis... [more]
TRXM_ORYSJ2.145e-2649.04Thioredoxin M-type, chloroplastic OS=Oryza sativa ... [more]
TRXM_PEA1.064e-2546.08Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
TRXM_CHLRE6.900e-2541.67Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]
TRXM_SPIOL1.537e-2438.10Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
TRXM_MAIZE2.008e-2446.15Thioredoxin M-type, chloroplastic OS=Zea mays GN=T... [more]
TRXM_WHEAT2.622e-2439.55Thioredoxin M-type, chloroplastic OS=Triticum aest... [more]
TRXM4_ARATH2.622e-2443.56Thioredoxin M-type 4, chloroplastic OS=Arabidopsis... [more]
THIO_GRIPA5.467e-2246.60Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 S... [more]
THIO1_ANASP5.467e-2244.66Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245E17 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245E17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404105 ID=DR404105; Name=DR404105; organism=Citrus sinensis; type=EST; length=758bp
GGGGAATTTCACTCTTCCACTTCTCCCACCTAACCAATAAAAACACACAC
GCACACTTATTCTCTGATCAAACAAACACTCTTCTTCAGTTATGGCTTCT
GTTTCCTCTTCATCGTCATCATCTTCTTGTTTCACTTCTGCCCATTTTGC
CATTCCACGCGTCTCTTCATTTCCTTCTCATACGCCCAACAAACTCTCAT
TTCCCTCTCATTTTTACGCCAAAAACGCTACCTTTAAGGCTCCAAACAGG
TCTCTTTCACTTAAGGTTCTCTGTGTACGTGAATCTAGAGCAGTGGTCAC
CAAAGACTCGTGGGAAAAGTCGATCCTGAACAGTGATACCCCTGTTCTCG
TTGAATTTTATGCGAGTTGGTGTGGACCGTGCAGGATGGTTCATCGGGTG
ATTGATGAGATTGCAGGAGAGTATGCTGGGAGACTTAGATGTTTTATGGT
CAATACGGACACAGACCTAACAATTGCTGAGGACTATGAAATTAAGGCTG
TGCCTGTAGTTTTGCTCTTCAAGAATGGAGAGAAACGCGAAACTGTGGTT
GGAACCATGCCGAAGGAGTTCTACATTGCTGCTATTGAGAGGGTTCTGAA
GTCATAAACATGATCTAATGGCTTGAAGATCCATTGAAGTCGATCAATTC
GTTTTAGGTGTCAAATGACCAGTATTGGCTGAATTTTCCATTGGGTCATG
ATTACTTTAGATGTACATCATCTAGATATTGCTTCCCAGGTACCAACACC
ACTGGTGC
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