DR404104

Overview
NameDR404104
Unique NameDR404104
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6168 contig Csv1_Contig6168:1..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404104 vs. ExPASy Swiss-Prot
Match: TCP9_ARATH (Transcription factor TCP9 OS=Arabidopsis thaliana GN=TCP9 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.062e-27
Identity = 60/79 (75.95%), Postives = 64/79 (81.01%), Query Frame = 1
Query:  442 KRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLXXXXXXXXXXXXXXXVPAIAVSVNGTLKIP 678
            KR+STKDRHTKVEGRGRRIR+PATCAARIFQLTRELGHKSDGET+RWLL               VPAIA+SVNGTLKIP
Sbjct:   71 KRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMSVNGTLKIP 149          
BLAST of DR404104 vs. ExPASy Swiss-Prot
Match: TCP19_ARATH (Transcription factor TCP19 OS=Arabidopsis thaliana GN=TCP19 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.547e-25
Identity = 57/79 (72.15%), Postives = 62/79 (78.48%), Query Frame = 1
Query:  442 KRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLXXXXXXXXXXXXXXXVPAIAVSVNGTLKIP 678
            KR ++KDRHTKVEGRGRRIR+PA CAAR+FQLTRELGHKSDGET+RWLL               VPAIAVSVNGTLKIP
Sbjct:   53 KRPTSKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVSVNGTLKIP 131          
BLAST of DR404104 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSJ (Transcription factor PCF2 OS=Oryza sativa subsp. japonica GN=PCF2 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.001e-21
Identity = 50/74 (67.57%), Postives = 56/74 (75.68%), Query Frame = 1
Query:  457 KDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLXXXXXXXXXXXXXXXVPAIAVSVNGTLKIP 678
            +DRHTKVEGRGRRIR+PA CAARIFQLTRELGHKSDGET+RWLL               VPAIA +V+G L+IP
Sbjct:   76 RDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIATTVDGVLRIP 149          
BLAST of DR404104 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSI (Transcription factor PCF2 OS=Oryza sativa subsp. indica GN=PCF2 PE=4 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.001e-21
Identity = 50/74 (67.57%), Postives = 56/74 (75.68%), Query Frame = 1
Query:  457 KDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLXXXXXXXXXXXXXXXVPAIAVSVNGTLKIP 678
            +DRHTKVEGRGRRIR+PA CAARIFQLTRELGHKSDGET+RWLL               VPAIA +V+G L+IP
Sbjct:   76 RDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIATTVDGVLRIP 149          
BLAST of DR404104 vs. ExPASy Swiss-Prot
Match: TCP15_ARATH (Transcription factor TCP15 OS=Arabidopsis thaliana GN=TCP15 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.222e-20
Identity = 48/77 (62.34%), Postives = 56/77 (72.73%), Query Frame = 1
Query:  442 KRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLXXXXXXXXXXXXXXXVPAIAVSVNGTLK 672
            KR+STKDRHTKVEGRGRRIR+PA CAAR+FQLTRELGHKSDGET+ WLL               +PA   S+N +L+
Sbjct:   48 KRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLR 124          
BLAST of DR404104 vs. ExPASy Swiss-Prot
Match: TCP14_ARATH (Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.177e-20
Identity = 47/77 (61.04%), Postives = 56/77 (72.73%), Query Frame = 1
Query:  442 KRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLXXXXXXXXXXXXXXXVPAIAVSVNGTLK 672
            KR+STKDRHTKV+GRGRRIR+PA CAAR+FQLTRELGHKSDGET+ WLL               +PA   S+N +L+
Sbjct:  113 KRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLR 189          
BLAST of DR404104 vs. ExPASy Swiss-Prot
Match: TCP20_ARATH (Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.374e-20
Identity = 48/76 (63.16%), Postives = 54/76 (71.05%), Query Frame = 1
Query:  427 NNNNNKRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLXXXXXXXXXXXXXXXVPAIAVS 654
            N    KRSS KDRHTKVEGRGRRIR+PA CAARIFQLTRELGHKSDGET++WLL               +PA A++
Sbjct:   69 NQLGPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALA 144          
BLAST of DR404104 vs. ExPASy Swiss-Prot
Match: TCP22_ARATH (Transcription factor TCP22 OS=Arabidopsis thaliana GN=TCP22 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.938e-18
Identity = 43/76 (56.58%), Postives = 53/76 (69.74%), Query Frame = 1
Query:  445 RSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLXXXXXXXXXXXXXXXVPAIAVSVNGTLK 672
            +  TKDRHTKV+GRGRRIR+PA CAAR+FQLTRELGHKSDGET+ WLL               +PA   ++N +L+
Sbjct:   60 KKPTKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFSTLNASLR 135          
BLAST of DR404104 vs. ExPASy Swiss-Prot
Match: TCP8_ARATH (Transcription factor TCP8 OS=Arabidopsis thaliana GN=TCP8 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 1
Query:  445 RSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLL 588
            + STKDRHTKV+GRGRRIR+PA CAAR+FQLTRELGHKSDGET+ WLL
Sbjct:   57 KRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLL 104          
BLAST of DR404104 vs. ExPASy Swiss-Prot
Match: PCF3_ORYSJ (Transcription factor PCF3 OS=Oryza sativa subsp. japonica GN=PCF3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 1
Query:  454 TKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLL 588
            TKDRHTKVEGRGRRIR+PA CAAR+FQLTRELGHK+DGET+ WLL
Sbjct:  152 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLL 196          
The following BLAST results are available for this feature:
BLAST of DR404104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
TCP9_ARATH6.062e-2775.95Transcription factor TCP9 OS=Arabidopsis thaliana ... [more]
TCP19_ARATH2.547e-2572.15Transcription factor TCP19 OS=Arabidopsis thaliana... [more]
PCF2_ORYSJ1.001e-2167.57Transcription factor PCF2 OS=Oryza sativa subsp. j... [more]
PCF2_ORYSI1.001e-2167.57Transcription factor PCF2 OS=Oryza sativa subsp. i... [more]
TCP15_ARATH3.222e-2062.34Transcription factor TCP15 OS=Arabidopsis thaliana... [more]
TCP14_ARATH7.177e-2061.04Transcription factor TCP14 OS=Arabidopsis thaliana... [more]
TCP20_ARATH9.374e-2063.16Transcription factor TCP20 OS=Arabidopsis thaliana... [more]
TCP22_ARATH3.938e-1856.58Transcription factor TCP22 OS=Arabidopsis thaliana... [more]
TCP8_ARATH8.773e-1883.33Transcription factor TCP8 OS=Arabidopsis thaliana ... [more]
PCF3_ORYSJ3.334e-1786.67Transcription factor PCF3 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245E16 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245E16 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404104 ID=DR404104; Name=DR404104; organism=Citrus sinensis; type=EST; length=679bp
TTTTTTTTTTTTTTTTCCTTCGTTTTTGCTCTCAATCTTTCTCTGTGTAT
ACAGGCAATCCTCACTTTAGTAAAATTTTTCTGACCCAGAATTTAATTTT
CATTTCTAAGCTCAAGTAGCTATCTCGGTTTTTGTTTTATCTTTAAAATT
TTCACTACTGATTGTTGTTAAACCTAACAAATGACGTCGTGTCGAGAAAC
GGATCCGGATGATGATGGAGTGGCCTCTGACGTGAGCACAGGAGACGCAG
AGGAAAGCAACAAGACCGTCCATGAAACGACGCCGCTACAAGCCATACCG
TTAAAAGAAGAGCCCGTAGATTCTTACCAGGAACAAAAGCCCGGACTGCC
GACGCCTATCGGAGTAGTCCCGGTGGCCATGCAGATGCAAGTGCCAATGC
AAGTACCCATGACAACGGTCACAGCAAACAATAACAATAACAAACGGTCA
TCCACCAAAGACCGCCACACGAAAGTGGAAGGCCGAGGCCGTAGGATTCG
AATACCAGCCACGTGTGCCGCGAGGATCTTTCAACTAACCCGCGAACTCG
GCCACAAATCAGATGGCGAAACCGTCAGGTGGTTGCTCGAANNNGCCGAG
CAAGCCATCNNNGAAGCTACCGGCACCGGCACCGTCCCCGCCATCGCCGT
CTCCGTCAACGGAACTCTGAAAATCCCAA
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