CX069897

Overview
NameCX069897
Unique NameCX069897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX069897 vs. ExPASy Swiss-Prot
Match: DNJ11_ARATH (Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2)

HSP 1 Score: 47.3654 bits (111), Expect = 2.633e-11
Identity = 26/61 (42.62%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:  619 SGNGRHFIEFHNAYETLLYPMARAVYDMTLVSRRRTRTASFRCSGQSGFHPARKWETDQCW 801
            S +   F++ H AY TL  P  R+VYD  ++  RR+R  +   SG  G +  R WETDQCW
Sbjct:  104 SSSADEFMKIHAAYCTLSDPEKRSVYDRRML--RRSRPLTVGTSGL-GSYVGRNWETDQCW 161

HSP 2 Score: 40.817 bits (94), Expect = 2.633e-11
Identity = 22/52 (42.31%), Postives = 30/52 (57.69%), Query Frame = 3 
Query:  468 SPRMFSVEMPVTVPGTGGSLYEVLRLEPTATILEIKMAYRSLAKVYHPDFVG 623
            SPR+  +   +T      SLY+VL +   AT  +IK AYR LA++ HPD  G
Sbjct:   49 SPRLHQIPRRLTT--VPASLYDVLEVPLGATSQDIKSAYRRLARICHPDVAG 98
The following BLAST results are available for this feature:
BLAST of CX069897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DNJ11_ARATH2.633e-1142.62Chaperone protein dnaJ 11, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_13E09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13E09-I17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069897 ID=CX069897; Name=CX069897; organism=Citrus sinensis; type=EST; length=868bp
TTTGGGTACCGCGGCCCCCCCCTTAGCGCGTCCTCAAGTGATCGATTGGT
TTCTACTCTGCTAGACGGAGACCGGCTTGACCCTAAGGTTGAAAGCTCTT
TGGGCGCTGGCTTTTCAAAACCTATATAGCTTAATGAGAGACACTAGTCA
GATAGAATTCAGATTCCTTGCTTTGCTTACTATAAGCAATTTTGGTATAA
GAAATGATGTCTATGATGCGCTGTCGCATATGCGCTGTTAACTGAGATGA
TTTCCTTACCTTACAATAGTAATATAGTTAATAAGGGGTTGAGGGGTGTA
TACCAAAACCCGCGACGGAGGACTGATCTCCTTCTTCCTAGAAGCATCAA
ATCTTCCGATGTCTTTGTAAGAACAATAGTCAATTGAGCCACGGGAAAGC
TTGAAGATCGGAAGCTGCTCCCCTGTTGCTCTTCGATTTCACTGCCGCTT
CGGGAAAGAACAAGAGGAGTCCCCGTATGTTTTCAGTGGAGATGCCGGTG
ACGGTACCGGGGACGGGAGGGAGCTTGTACGAGGTGCTGAGGTTGGAGCC
AACGGCGACGATTCTGGAGATTAAGATGGCGTATCGGAGTTTGGCGAAGG
TTTATCATCCTGATTTTGTCGGGTAACGGTCGGCATTTCATCGAGTTCCA
CAATGCTTACGAGACGCTGTTGTATCCAATGGCCAGGGCTGTTTATGACA
TGACTTTGGTGAGTAGGAGGAGGACGAGAACGGCGTCGTTTAGGTGTTCG
GGTCAGTCCGGATTTCACCCGGCCCGTAAGTGGGAAACTGACCAGTGTTG
GTAGGAATTTTCAATTTAGGGTCCAACATTCTTGTTTAGGTATTACCTGT
GATGATAAATTATGGCGA
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