DR404100

Overview
NameDR404100
Unique NameDR404100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404100 vs. ExPASy Swiss-Prot
Match: SPT42_ARATH (Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana GN=At5g63670 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.960e-56
Identity = 98/115 (85.22%), Postives = 110/115 (95.65%), Query Frame = 1
Query:  187 MGSAPA*IPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 531
            MGSAPA IPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+V+ TTPNFNGIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q+LC++ERVQYV PKR
Sbjct:    1 MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFNGIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQHLCQEERVQYVLPKR 115          
BLAST of DR404100 vs. ExPASy Swiss-Prot
Match: SPT41_ARATH (Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana GN=At5g08565 PE=3 SV=3)

HSP 1 Score: 216.083 bits (549), Expect = 1.659e-55
Identity = 96/115 (83.48%), Postives = 107/115 (93.04%), Query Frame = 1
Query:  187 MGSAPA*IPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 531
            MG APA IPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+VD TTPNFNGIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q +C+  RVQYVPPKR
Sbjct:    1 MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFNGIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPKR 115          
BLAST of DR404100 vs. ExPASy Swiss-Prot
Match: SPT4_NEUCR (Transcription elongation factor spt-4 OS=Neurospora crassa GN=spt-4 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.282e-19
Identity = 40/98 (40.82%), Postives = 62/98 (63.27%), Query Frame = 1
Query:  232 LRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 522
            LRAC+ C +V TY +FR+ GC NC  F  +    +++  CT+  F GII++ +P +SW A+W R+  +V G Y   VS  LP+D++   ED+ +QY+P
Sbjct:   14 LRACMVCSIVMTYARFRDEGCPNCEDFLHLQGSPDQIDSCTSQVFEGIITIANPQKSWVAKWQRLDGYVKGVYATKVSGQLPDDVRTTLEDDGIQYIP 111          
BLAST of DR404100 vs. ExPASy Swiss-Prot
Match: SPT4H_MACFA (Transcription elongation factor SPT4 OS=Macaca fascicularis GN=SUPT4H1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.510e-19
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  208 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 516
            +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V DCT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:    6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of DR404100 vs. ExPASy Swiss-Prot
Match: SPT4H_HUMAN (Transcription elongation factor SPT4 OS=Homo sapiens GN=SUPT4H1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.510e-19
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  208 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 516
            +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V DCT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:    6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of DR404100 vs. ExPASy Swiss-Prot
Match: SPT4H_BOVIN (Transcription elongation factor SPT4 OS=Bos taurus GN=SUPT4H1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.510e-19
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  208 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 516
            +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V DCT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:    6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of DR404100 vs. ExPASy Swiss-Prot
Match: SPT41_MOUSE (Transcription elongation factor SPT4 1 OS=Mus musculus GN=Supt4h1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.510e-19
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  208 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 516
            +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V DCT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:    6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of DR404100 vs. ExPASy Swiss-Prot
Match: SPT4H_PONAB (Transcription elongation factor SPT4 OS=Pongo abelii GN=SUPT4H1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.242e-18
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  208 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 516
            +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V DCT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:    6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPGDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of DR404100 vs. ExPASy Swiss-Prot
Match: SPT4H_DANRE (Transcription elongation factor SPT4 OS=Danio rerio GN=supt4h1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.622e-18
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 1
Query:  208 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALP 474
            +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+G+I++M P  SW A+W RIG F PG Y + V+  LP
Sbjct:    6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCESYLQMKGNREMVYECTSSSFDGVIAMMSPEDSWVAKWQRIGNFKPGVYAVTVTGRLP 94          
BLAST of DR404100 vs. ExPASy Swiss-Prot
Match: SPT4H_XENLA (Transcription elongation factor SPT4 OS=Xenopus laevis GN=supt4h1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.119e-18
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  208 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 516
            +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V DCT+ +F+GI+++M P  SW ++W RI  F PG Y ++V+  LP+ +    +   V Y
Sbjct:    6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIVAMMSPDDSWVSKWQRITNFKPGVYAVSVTGRLPQGIVRELKSRGVVY 108          
The following BLAST results are available for this feature:
BLAST of DR404100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
SPT42_ARATH1.960e-5685.22Transcription elongation factor SPT4 homolog 2 OS=... [more]
SPT41_ARATH1.659e-5583.48Transcription elongation factor SPT4 homolog 1 OS=... [more]
SPT4_NEUCR7.282e-1940.82Transcription elongation factor spt-4 OS=Neurospor... [more]
SPT4H_MACFA9.510e-1942.31Transcription elongation factor SPT4 OS=Macaca fas... [more]
SPT4H_HUMAN9.510e-1942.31Transcription elongation factor SPT4 OS=Homo sapie... [more]
SPT4H_BOVIN9.510e-1942.31Transcription elongation factor SPT4 OS=Bos taurus... [more]
SPT41_MOUSE9.510e-1942.31Transcription elongation factor SPT4 1 OS=Mus musc... [more]
SPT4H_PONAB1.242e-1842.31Transcription elongation factor SPT4 OS=Pongo abel... [more]
SPT4H_DANRE1.622e-1847.78Transcription elongation factor SPT4 OS=Danio reri... [more]
SPT4H_XENLA2.119e-1842.31Transcription elongation factor SPT4 OS=Xenopus la... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAG-PNP1245E12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404100 ID=DR404100; Name=DR404100; organism=Citrus sinensis; type=EST; length=752bp
GGGGATACTAAAACTACAGTTGCAATGAAATTACAAGAATAACACCGATT
CCGGATTACCAGCAGCTTCCGAGCATTCGTCGTCGTGTCTTCTCTGGAAC
TCTCTTACTAGCCCTTAAAAGATCAAGGTCTCTGTCATCAAGAGACGAAA
CGACTTACAGATATTGTCGGGTGCCGCGAGAGAACAATGGGAAGCGCACC
GGCATAAATTCCAACAAGCTTCGGGCATGAGCTGAGAGCTTGCCTCCGTT
GTCGGCTTGTCAAAACCTATGATCAGTTTAGAGAATCGGGATGCGAGAAC
TGTCCCTTCTTCAAGATGGATGAAGACCACGAGCGTGTTGTTGATTGTAC
TACCCCTAATTTTAATGGCATTATATCAGTCATGGATCCAACTAGAAGCT
GGGCTGCTCGCTGGTTGCGAATTGGAAGATTTGTCCCTGGTTGTTATACT
CTTGCTGTCTCAGAAGCCCTACCTGAGGACTTGCAGAACTTATGTGAAGA
CGAGCGCGTGCAATATGTGCCGCCAAAACGTTAATGACAGTTTGAGCAGT
GCATTGTCTGTAAAGATTATATCTGTTTCGGGTTACTTCGGAGATGACAT
GTTTAACGATTATATGCAACTGTAGCTGCTAATGTTGACTTGAATTTCTT
GTGCCCAATGCTTGTGTAGTAATCCTATTTTATGTTTGTAACTTGTATGC
TGCGTTTTGATTTTTTAATGGAGTTCTAGTAAAAAAAAAAAAAAAANNNA
AA
back to top