DR404094

Overview
NameDR404094
Unique NameDR404094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7950 contig Csv1_Contig7950:109..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_ARATH (Cytoplasmic tRNA 2-thiolation protein 1 OS=Arabidopsis thaliana GN=NCS6 PE=2 SV=2)

HSP 1 Score: 264.618 bits (675), Expect = 3.137e-70
Identity = 128/149 (85.91%), Postives = 140/149 (93.96%), Query Frame = 2
Query:  206 ESKSKKA-GGRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCT 649
            E+K+KKA   RLC  CN R+  LKRPKTL+QICRECFYEVFEEEIHQVIV N+LFK+GER+AIGASGGKDSTVLA+VLSELNRRHNYGLDLFLLSIDEGI+GYRDDSL+TVKRNE+QYGLPLKIVSYKDLYGWTMDEIVK+IGLKNNCT
Sbjct:    2 EAKNKKAVASRLCCLCNLRRPVLKRPKTLQQICRECFYEVFEEEIHQVIVQNRLFKSGERVAIGASGGKDSTVLAYVLSELNRRHNYGLDLFLLSIDEGITGYRDDSLETVKRNEVQYGLPLKIVSYKDLYGWTMDEIVKMIGLKNNCT 150          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_ORYSJ (Cytoplasmic tRNA 2-thiolation protein 1 OS=Oryza sativa subsp. japonica GN=NCS6 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.486e-67
Identity = 121/143 (84.62%), Postives = 132/143 (92.31%), Query Frame = 2
Query:  221 KAGGRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCT 649
            +AG RLC+ C +RKAALKRPKTLEQICRECFY VFE+EIHQ IV N LFK G+R+AIGASGGKDSTVLA+VLSELNRRH Y LDLFLLS+DEGI+GYRDDSL+TVKRNEIQYGLPLKIVSYKDLYGWTMD+IVK IGLKNNCT
Sbjct:   14 RAGSRLCTRCGERKAALKRPKTLEQICRECFYVVFEDEIHQTIVDNNLFKPGDRVAIGASGGKDSTVLAYVLSELNRRHKYCLDLFLLSVDEGITGYRDDSLETVKRNEIQYGLPLKIVSYKDLYGWTMDDIVKAIGLKNNCT 156          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_CHLRE (Cytoplasmic tRNA 2-thiolation protein 1 OS=Chlamydomonas reinhardtii GN=NCS6 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.699e-58
Identity = 104/139 (74.82%), Postives = 119/139 (85.61%), Query Frame = 2
Query:  233 RLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCT 649
            RLC  CN  +A L RPKT EQ+CRECF+  FEEE+HQ IV N+LFK GER+A+ ASGGKDSTVLA ++S LN R+NYGLDLFLLSIDEGI+GYRDDSL+TVKRNE QYG+PLK+VSYK+LYGWTMDEIV  IG KNNCT
Sbjct:    4 RLCVRCNTSRAMLNRPKTQEQVCRECFFTAFEEEVHQTIVDNKLFKHGERLAVAASGGKDSTVLAHIMSTLNARYNYGLDLFLLSIDEGITGYRDDSLETVKRNEQQYGIPLKVVSYKELYGWTMDEIVSQIGTKNNCT 142          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_DICDI (Cytoplasmic tRNA 2-thiolation protein 1 OS=Dictyostelium discoideum GN=ctu1 PE=2 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 4.863e-55
Identity = 99/148 (66.89%), Postives = 122/148 (82.43%), Query Frame = 2
Query:  206 ESKSKKAGGRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCT 649
            E+ + K   +LC  CN  +  LKRPKT E IC+ECFY VFE+EIH  I+ N LFK G+R+AIGASGGKDSTVLA +++ LN++++YGLDLFLLSIDEGI+GYRDDSL+TVKRN+ QY +PLKI+SYK+LY WTMD+IVK IGLK NCT
Sbjct:    2 ENTATKKKSKLCEVCNVSRPVLKRPKTGEMICKECFYTVFEDEIHHTIISNNLFKRGDRVAIGASGGKDSTVLAEIMTLLNKKYDYGLDLFLLSIDEGITGYRDDSLETVKRNQEQYQIPLKILSYKELYNWTMDDIVKEIGLKGNCT 149          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_ASHGO (Cytoplasmic tRNA 2-thiolation protein 1 OS=Ashbya gossypii GN=NCS6 PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.198e-53
Identity = 96/145 (66.21%), Postives = 119/145 (82.07%), Query Frame = 2
Query:  215 SKKAGGRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCT 649
            +K   G+LC  C+ RKA +KRPK L+++C+ CF+ VFE EIH  I+ N+LF+ GER+A+GASGGKDSTVLA++L  LN RH+YGL++ LLSIDEGI GYRDDSL TVKRN+ QYGLPLKIVSYKDLY WTMDEIV   G++N+CT
Sbjct:   12 AKVTAGQLCELCHARKALVKRPKNLQKVCKLCFFHVFETEIHNTIMENKLFQRGERVAVGASGGKDSTVLAYILKLLNERHDYGLEIVLLSIDEGIVGYRDDSLATVKRNQEQYGLPLKIVSYKDLYDWTMDEIVACAGMRNSCT 156          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_USTMA (Cytoplasmic tRNA 2-thiolation protein 1 OS=Ustilago maydis GN=NCS6 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.668e-53
Identity = 95/139 (68.35%), Postives = 115/139 (82.73%), Query Frame = 2
Query:  233 RLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCT 649
            +LC  CN  +A L+RPKT +QIC+ECF+ VFE E+H  IV N LFK G+R+AIGASGGKDSTVLA  +  LN R++YGLDLFLLSIDEGI+GYRDDSL+TVKRN+ QY LPLK++ Y +LYGWTMD+IVK +G KNNCT
Sbjct:    4 KLCVICNAERAVLRRPKTAQQICKECFFYVFETEVHHTIVSNNLFKRGDRVAIGASGGKDSTVLAHCMKVLNERYDYGLDLFLLSIDEGITGYRDDSLETVKRNQQQYQLPLKVLGYGELYGWTMDDIVKSVGRKNNCT 142          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_KLULA (Cytoplasmic tRNA 2-thiolation protein 1 OS=Kluyveromyces lactis GN=NCS6 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.485e-53
Identity = 96/139 (69.06%), Postives = 115/139 (82.73%), Query Frame = 2
Query:  233 RLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCT 649
            +LC  C+ RKA +KRPK L++IC+ECF+ VFE EIH  IV N LF  GERIA+GASGGKDSTVLA+VL  LN RH+YG+++ LLSIDEGI GYRDDSL TVKRN++QY LPL+IVSYKDLY WTMDEIV   G++N+CT
Sbjct:   18 QLCELCHARKAVMKRPKNLQRICKECFFSVFETEIHNTIVSNNLFHRGERIAVGASGGKDSTVLAYVLKLLNDRHDYGVEIVLLSIDEGIVGYRDDSLATVKRNQVQYDLPLEIVSYKDLYNWTMDEIVACAGIRNSCT 156          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_CRYNE (Cytoplasmic tRNA 2-thiolation protein 1 OS=Cryptococcus neoformans GN=NCS6 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.014e-52
Identity = 95/138 (68.84%), Postives = 120/138 (86.96%), Query Frame = 2
Query:  239 CSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIV-GNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCT 649
            CS C+  +A +KRPKT +Q+C++CF+EVFE E+H  IV G  +FK GER+AIGASGGKDSTVLA VLS LN+R++YGLDL+LLSIDEGI+GYRDDSL+TVK+N+ +YGLPLKI+SY +LYGWTMD+IV+ +G KNNCT
Sbjct:    6 CSLCHTARALVKRPKTGQQVCKDCFFEVFETEVHNTIVEGEGIFKRGERVAIGASGGKDSTVLAHVLSVLNKRYDYGLDLYLLSIDEGITGYRDDSLETVKQNQAEYGLPLKILSYSELYGWTMDKIVEQVGKKNNCT 143          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_XENTR (Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus tropicalis GN=ctu1 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.259e-52
Identity = 94/137 (68.61%), Postives = 114/137 (83.21%), Query Frame = 2
Query:  239 CSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCT 649
            CS+C +R+A L+RPKT   +C++CF+  FEEEIH  IV  +LF  GE++ IGASGGKDSTVLA VL  LN R+ YGLDL L+S+DEGISGYRDDSL+TVKRN+ QY LPLKIVSY++LYGWTMD+IVK +GLKNNCT
Sbjct:    5 CSSCEERRAVLRRPKTGHSLCKDCFFHAFEEEIHHTIVSAKLFNPGEKVGIGASGGKDSTVLAHVLKVLNERYAYGLDLILVSVDEGISGYRDDSLETVKRNQQQYELPLKIVSYQELYGWTMDQIVKQVGLKNNCT 141          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_SCHPO (Cytoplasmic tRNA 2-thiolation protein 1 OS=Schizosaccharomyces pombe GN=ncs6 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.853e-52
Identity = 96/140 (68.57%), Postives = 116/140 (82.86%), Query Frame = 2
Query:  233 RLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLY-GWTMDEIVKVIGLKNNCT 649
            +LC  CN+R+ AL RPKT ++IC+ECFY VFE EIH VI+ N+LF  GER+ IGASGGKDSTVLA+V+  LN R++YGL+L+L+S+DEGI GYRDDSL TVKRN+ QYGLP+KIVSY DLY GWTMD +V  IG KNNCT
Sbjct:    4 KLCQLCNERRPALVRPKTGQKICKECFYYVFETEIHNVIIENKLFVRGERVGIGASGGKDSTVLAYVMKLLNERYDYGLELYLISVDEGIRGYRDDSLDTVKRNQQQYGLPMKIVSYADLYDGWTMDNVVARIGTKNNCT 143          
The following BLAST results are available for this feature:
BLAST of DR404094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CTU1_ARATH3.137e-7085.91Cytoplasmic tRNA 2-thiolation protein 1 OS=Arabido... [more]
CTU1_ORYSJ2.486e-6784.62Cytoplasmic tRNA 2-thiolation protein 1 OS=Oryza s... [more]
CTU1_CHLRE4.699e-5874.82Cytoplasmic tRNA 2-thiolation protein 1 OS=Chlamyd... [more]
CTU1_DICDI4.863e-5566.89Cytoplasmic tRNA 2-thiolation protein 1 OS=Dictyos... [more]
CTU1_ASHGO1.198e-5366.21Cytoplasmic tRNA 2-thiolation protein 1 OS=Ashbya ... [more]
CTU1_USTMA2.668e-5368.35Cytoplasmic tRNA 2-thiolation protein 1 OS=Ustilag... [more]
CTU1_KLULA3.485e-5369.06Cytoplasmic tRNA 2-thiolation protein 1 OS=Kluyver... [more]
CTU1_CRYNE1.014e-5268.84Cytoplasmic tRNA 2-thiolation protein 1 OS=Cryptoc... [more]
CTU1_XENTR2.259e-5268.61Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus... [more]
CTU1_SCHPO3.853e-5268.57Cytoplasmic tRNA 2-thiolation protein 1 OS=Schizos... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245E06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404094 ID=DR404094; Name=DR404094; organism=Citrus sinensis; type=EST; length=650bp
GGGGCAGAGACTTTGGAGGGGTGAGGGTGCCGGTCAGACCGCTGCTTTCA
TAACAGTTCCATTCCGAGAAGCTGTTGCCGCACTGCAAAAGCAAACTCAA
ATCTTCAATTTTTCCCTCATAACCCAAACTTGATCTCTTGTAAGTCTGTT
AGCTTGTCTCTTCATAGTTTACTTAGTGGGCCATTAACCGTCAATGGAGG
TCGCCGAGTCGAAGTCCAAGAAGGCCGGTGGCCGCCTTTGTTCCACCTGT
AACCAGAGAAAGGCTGCCCTCAAACGACCTAAAACCCTAGAACAGATATG
TAGGGAGTGTTTCTATGAGGTATTTGAGGAGGAGATCCACCAAGTCATTG
TGGGCAATCAGCTATTCAAGGCTGGTGAGCGTATTGCCATCGGCGCCTCT
GGTGGAAAAGATTCCACTGTCCTTGCTTTTGTGTTGTCAGAGCTGAACCG
GCGTCACAACTATGGCCTTGATCTTTTCCTCCTATCAATTGATGAAGGCA
TTTCAGGATACAGGGATGATTCACTTCAAACTGTCAAAAGAAATGAAATT
CAGTATGGTCTGCCACTGAAGATTGTTTCATACAAGGATTTATATGGATG
GACAATGGATGAGATAGTGAAGGTGATCGGTTTAAAGAATAATTGCACCT
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