CX069856

Overview
NameCX069856
Unique NameCX069856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1470 contig Csv1_Contig1470:40..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.960e-36
Identity = 68/119 (57.14%), Postives = 91/119 (76.47%), Query Frame = 3
Query:    9 LMKLVTGCILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            L+KLV  C++ ++C M        A V+CG VVN+LTPC++YV+ GGA+  +CC GVR+LY+ A++TADRQ++C CLKQAV+GI YT    G AAGLP KCG+NIPY+ISPSTDC S++
Sbjct:    7 LLKLV--CLVAVMCCMAVGGPKAMAAVSCGQVVNNLTPCINYVANGGALNPSCCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.505e-26
Identity = 55/111 (49.55%), Postives = 79/111 (71.17%), Query Frame = 3
Query:   33 ILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            +L+ VCL+  A    +A V+C TV+ DL PC+SYV+ GG VPT CCNG+ TL + A+++ DRQ VC+C+K A+ G+T +      A  LP+KCG+++PY+ SPSTDC S+Q
Sbjct:    4 LLLAVCLV-LALHCGEAAVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.505e-26
Identity = 53/93 (56.99%), Postives = 67/93 (72.04%), Query Frame = 3
Query:   87 VTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            +TCG V + L PC++Y+  GG VP NCCNGVR+L NAA++TADRQ  C CLK A + I         AAGLP KCG+++PY+ISPSTDC SV+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGGVVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSI--KGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.965e-26
Identity = 58/120 (48.33%), Postives = 81/120 (67.50%), Query Frame = 3
Query:   12 MKLVTGCILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYV--SYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            M L   C++VL  ++G+     +  VT G V N L PC++Y+  S  GAVP  CC G+++L +AA++T  RQ  C+C+K A +GIT     FG A+GLP KCG+NIPY+ISPSTDC+SV+
Sbjct:    5 MSLKLACVVVLCMVVGAPLA--QGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGIT--GINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.965e-26
Identity = 58/120 (48.33%), Postives = 81/120 (67.50%), Query Frame = 3
Query:   12 MKLVTGCILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYV--SYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            M L   C++VL  ++G+     +  VT G V N L PC++Y+  S  GAVP  CC G+++L +AA++T  RQ  C+C+K A +GIT     FG A+GLP KCG+NIPY+ISPSTDC+SV+
Sbjct:    1 MSLKLACVVVLCMVVGAPLA--QGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGIT--GINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.838e-25
Identity = 59/123 (47.97%), Postives = 76/123 (61.79%), Query Frame = 3
Query:    6 MLMKLVTGCILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQ---AVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            M    VT   LV+   M    VS    +TCG V + L PC+ YV  GGAVP  CCNG+RT+   AR+TADRQT C CLK    ++SG+         AAGLP KCG+N+PY+IS ST+C++V+
Sbjct:    1 MASSAVTKLALVVALCMA---VSVAHAITCGQVTSSLAPCIGYVRSGGAVPPACCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNN-----AAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.256e-25
Identity = 55/114 (48.25%), Postives = 78/114 (68.42%), Query Frame = 3
Query:   33 ILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQ---AVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            ++V +C++ S  V     +TCG V ++L PC++YV  GGAVP  CCNG+R + N A++TADRQT C CLKQ   +V G+         AA LP KCG+N+PY+ISPST+C++V+
Sbjct:   11 LVVALCMVVS--VPIAQALTCGQVSSNLAPCIAYVRGGGAVPPACCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANN-----AAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.402e-24
Identity = 56/114 (49.12%), Postives = 75/114 (65.79%), Query Frame = 3
Query:   33 ILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQ---AVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            ++V +C++ S  V     +TCG V ++L PC+ YV  GGAVP  CCNG+R + N AR+T DRQ  C CLKQ   +V G+         AA LP KCG+NIPYQISPST+C++V+
Sbjct:   11 LVVALCMVVS--VPIAQAITCGQVSSNLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNN-----AAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.989e-24
Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 3
Query:   12 MKLVTGCILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            M ++  C  V   ++G+ +      ++CG V + L PC+SY++ GGAVP  CC+GV++L +AA++T DRQ  C CLK A + I  +    G AA  P KCG++IPY+ISPSTDCS VQ
Sbjct:    4 MAMMVLCAGVTCMVVGAPYTEA---LSCGQVSSSLAPCISYLTKGGAVPPACCSGVKSLNSAAKTTPDRQAACGCLKSAYNSI--SGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.557e-23
Identity = 49/112 (43.75%), Postives = 73/112 (65.18%), Query Frame = 3
Query:   33 ILVLVCLMGSAFV-STKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            +L L  L+ S F   ++A ++C  V  +L PCV YV  GGA+P +CCNG+R L   A S +D+Q VC+C+K  V  ++Y+      AA LP KCG+ +PY+I PST+C+S++
Sbjct:    5 VLPLCLLLASIFAWGSEAAISCNAVQANLYPCVVYVVQGGAIPYSCCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
The following BLAST results are available for this feature:
BLAST of CX069856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTP3_PRUDU7.960e-3657.14Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP6_ARATH1.505e-2649.55Non-specific lipid-transfer protein 6 OS=Arabidops... [more]
LTP1_MORNI1.505e-2656.99Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP2_GOSHI1.965e-2648.33Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI1.965e-2648.33Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP_MALDO2.838e-2547.97Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP_PRUAV8.256e-2548.25Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP1_PRUDU2.402e-2449.12Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_HELAN6.989e-2445.76Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTPA_ARATH1.557e-2343.75Non-specific lipid-transfer protein 10 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13C06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13C06-E11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069856 ID=CX069856; Name=CX069856; organism=Citrus sinensis; type=EST; length=628bp
CCGTAATGCTGATGAAACTTGTGACAGGCTGCATCTTGGTGCTTGTTTGC
TTGATGGGCAGTGCGTTCGTGTCCACCAAAGCACAAGTAACATGTGGCAC
GGTGGTGAATGACTTGACTCCATGCGTATCCTACGTGTCATACGGCGGGG
CCGTGCCGACGAACTGTTGCAACGGAGTGAGGACACTCTACAATGCCGCT
AGGTCCACAGCTGACCGTCAGACCGTGTGTAAGTGCTTGAAACAAGCTGT
TAGCGGAATCACGTACACCAGGTACCAGTTCGGATTCGCAGCTGGACTTC
CCGCCAAATGTGGACTCAACATTCCTTACCAGATCAGCCCTTCTACCGAC
TGCAGCAGTGTGCAGTGAGAATGATGAACTAGTAGCCATCAGTTATGAGG
CTGTGTGCTTGGATAATTAAGCATGGGGTGAGAGAATAAGAGTGCTGCGC
TTCTCTTTGATGGTGTGTTAGTGTTAAATAGAAGTTGTTAGCGTCATCTG
GTGGGATTTATGTTGTCTCATGTTTTGTTAGGTTCTGTCCCAACCATAAG
TACTAAAGAATAAGATTTTGTAAGTTACGTTTATGGAGTGACATTTTGTT
ATTATGTGTTNNAAAAAAAAAAAAAAAA
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