CX069829

Overview
NameCX069829
Unique NameCX069829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069829 vs. ExPASy Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.540e-35
Identity = 77/196 (39.29%), Postives = 129/196 (65.82%), Query Frame = 3
Query:    3 HLLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSECVLQYAGGLPVALEVLGSFLNGRSLDQWKSTLKRLQIDPPNQIMSVLEISFNGLQHSEKKIFLDVACFFNLEDRDYVTKVLDGCDFSPVIGIEVLINKSLITILNDNTLWMHDLLQELGQQIVQRQSPEEPGKRSRLWKEEEVCHVLIENT 590
            HL++ +  D +Y+ ++L   E+ QLF   AF  + P+E   +LS  V+ YA GLP+AL+V GS L+   L +WKS ++ ++ +  + I+  L+IS++GL+  ++++FLD+ACF   E++DY+ ++L+ C      G+ +LI+KSL+ I   N + MHDL+Q++G+ IV  Q  ++PG+RSRLW  +EV  V+  NT
Sbjct:  334 HLIEKN--DIIYEVTALPDHESIQLFKQHAFGKEVPNENFEKLSLEVVNYAKGLPLALKVWGSLLHNLRLTEWKSAIEHMKNNSYSGIIDKLKISYDGLEPKQQEMFLDIACFLRGEEKDYILQILESCHIGAEYGLRILIDKSLVFISEYNQVQMHDLIQDMGKYIVNFQ--KDPGERSRLWLAKEVEEVMSNNT 525          
BLAST of CX069829 vs. ExPASy Swiss-Prot
Match: Y4117_ARATH (Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.649e-29
Identity = 69/196 (35.20%), Postives = 116/196 (59.18%), Query Frame = 3
Query:    6 LLKTHGMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSECVLQYAGGLPVALEVLGSFLNGRSLDQWKSTLKRLQIDPPNQIMSVLEISFNGLQHSEKKIFLDVACFFNLEDRDYVTK-VLDGCDFSPVIGIEVLINKSLITILNDNTLWMHDLLQELGQQIVQRQSPEEPGKRSRLWKEEEVCHVLIENT 590
            LL +H ++ +Y+ +  +  EA  +F   AFK   PS++   L+      AG LP+AL VLGSF+ G+  ++W+ +L  L+     ++  VL++ ++GL   EK +FL +AC F+ +  +Y+ + ++   D     G++VL +KSLI    +  + MH LL++LG+++V++QS  EPGKR  L   +E C VL  NT
Sbjct:  329 LLVSHDINHMYQVAYPSKQEALTIFCQHAFKQSSPSDDLKHLAIEFTTLAGHLPLALRVLGSFMRGKGKEEWEFSLPTLKSRLDGEVEKVLKVGYDGLHDHEKDLFLHIACIFSGQHENYLKQMIIANNDTYVSFGLQVLADKSLIQKFENGRIEMHSLLRQLGKEVVRKQSIYEPGKRQFLMNAKETCGVLSNNT 524          
BLAST of CX069829 vs. ExPASy Swiss-Prot
Match: WRK16_ARATH (Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.069e-28
Identity = 68/186 (36.56%), Postives = 118/186 (63.44%), Query Frame = 3
Query:   24 MDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSECVLQYAGGLPVALEVLGSFLNGRSLD-QWKSTLKRLQIDPPNQIMSVLEISFNGLQHSEKKIFLDVACFFNLEDRDYVTKVLDGCDFSPVIGIEVLINKSLITILNDNTLWMHDLLQELGQQIVQRQSPEEPGKRSRLWKEEEVCHVL 578
            ++++Y+   LN  EA QLF++ A       +   ++S  V++YA G P+AL + G  L G+    + +    +L+  PP   +  ++ S++ L   EK IFLD+ACFF  E+ DYV ++L+GC F P +GI+VL+ KSL+TI ++N + MH+L+Q++G+QI+ R++  +  +RSRLW+   + ++L
Sbjct:  287 VNQIYEVQGLNEKEALQLFSLCASIDDMAEQNLHEVSMKVIKYANGHPLALNLYGRELMGKKRPPEMEIAFLKLKECPPAIFVDAIKSSYDTLNDREKNIFLDIACFFQGENVDYVMQLLEGCGFFPHVGIDVLVEKSLVTI-SENRVRMHNLIQDVGRQIINRET-RQTKRRSRLWEPCSIKYLL 470          
BLAST of CX069829 vs. ExPASy Swiss-Prot
Match: WRK52_ARATH (Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 4.062e-28
Identity = 68/191 (35.60%), Postives = 121/191 (63.35%), Query Frame = 3
Query:   21 GMDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQ-LSECVLQYAGGLPVALEVLGSFLNGRS-LDQWKSTLKRLQIDPPNQIMSVLEISFNGLQHSEKKIFLDVACFFNLEDRDYVTKVLDGCDFSPVIGIEVLINKSLITILNDNTLWMHDLLQELGQQIVQRQSPEEPGKRSRLWKEEEVCHVLIEN 587
            G++++Y+   LN  EA QLF + A   +   E+ +Q LS  V+ YA G P+A+ V G  L G+  L + ++   +L+  PP +I+   + +++ L  +EK IFLD+ACFF  E+ +YV ++L+GC F P + I+VL++K L+TI ++N +W+H L Q++G++I+  ++ +   +R RLW+   + ++L  N
Sbjct:  292 GINQIYEVQGLNEKEARQLFLLSASIKEDMGEQNLQELSVRVINYANGNPLAISVYGRELKGKKKLSEMETAFLKLKRRPPFKIVDAFKSTYDTLSDNEKNIFLDIACFFQGENVNYVIQLLEGCGFFPHVEIDVLVDKCLVTI-SENRVWLHKLTQDIGREIINGETVQIE-RRRRLWEPWSIKYLLEYN 480          
BLAST of CX069829 vs. ExPASy Swiss-Prot
Match: WRK19_ARATH (Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.724e-24
Identity = 64/189 (33.86%), Postives = 102/189 (53.97%), Query Frame = 3
Query:   24 MDEVYKPSSLNYDEAFQLFNMKAFKSQQPSEECVQLSECVLQYAGGLPVALEVLGSFLNGRSLDQWKSTLKRLQIDPPNQIMSVLEISFNGLQHSEKKIFLDVACFFNLEDRDYVTKVLDGCDFSPVIGIEVLINKSLITILNDNTLWMHDLLQELGQQIVQRQSPEEPGKRSRLWKEEEVCHVLIENT 590
            +D VY+   L+  ++  L +    +     E    LS  +++++ G P  L+ L S        +W    + ++   P  I  + E S  GL  +E+ IFLD+ACFFN  D+D V  +LDGC FS  +G   L++KSL+TI   N + M   +Q  G++IV+++S + PG RSRLW  + + HV I +T
Sbjct:  965 IDHVYEVKPLDIPKSLLLLDRGTCQIVLSPEVYKTLSLELVKFSNGNPQVLQFLSSIDR-----EWNKLSQEVKTTSPIYIPGIFEKSCCGLDDNERGIFLDIACFFNRIDKDNVAMLLDGCGFSAHVGFRGLVDKSLLTISQHNLVDMLSFIQATGREIVRQESADRPGDRSRLWNADYIRHVFINDT 1148          
The following BLAST results are available for this feature:
BLAST of CX069829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TMVRN_NICGU1.540e-3539.29TMV resistance protein N OS=Nicotiana glutinosa GN... [more]
Y4117_ARATH1.649e-2935.20Putative disease resistance protein At4g11170 OS=A... [more]
WRK16_ARATH1.069e-2836.56Probable WRKY transcription factor 16 OS=Arabidops... [more]
WRK52_ARATH4.062e-2835.60Probable WRKY transcription factor 52 OS=Arabidops... [more]
WRK19_ARATH2.724e-2433.86Probable WRKY transcription factor 19 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_13B02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13B02-C3-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069829 ID=CX069829; Name=CX069829; organism=Citrus sinensis; type=EST; length=779bp
AACATCTGTTAAAGACACATGGAATGGATGAAGTGTATAAGCCTAGCAGT
CTAAATTACGATGAAGCTTTTCAACTCTTCAACATGAAAGCTTTTAAATC
CCAGCAGCCTTCAGAAGAATGTGTACAGCTATCTGAATGTGTTCTACAGT
ATGCTGGTGGTCTTCCAGTAGCTCTCGAAGTTTTGGGTTCCTTTTTGAAT
GGTAGATCTTTGGATCAATGGAAAAGTACCCTGAAAAGACTACAGATAGA
TCCTCCAAATCAGATTATGAGTGTACTTGAAATAAGCTTTAACGGACTGC
AACATTCAGAGAAGAAAATATTTCTTGATGTTGCATGTTTCTTTAATTTG
GAGGATAGAGATTATGTAACAAAAGTTCTTGATGGATGTGATTTTTCCCC
AGTCATTGGAATAGAAGTTCTTATTAACAAATCTCTAATAACTATTTTAA
ATGACAACACACTTTGGATGCATGATTTGCTACAAGAATTAGGCCAACAA
ATTGTTCAAAGACAATCCCCTGAAGAACCTGGGAAACGCAGCAGATTATG
GAAGGAAGAAGAAGTCTGCCATGTGTTGATAGAAAACACAGTAAGTGATT
AAATAAGGCCCTGTTTGGTATTGTTGTTGAGTAGCTGTAACTTTTACTAG
AGTGTTATTAAACACTAGTTGCTGTATCTTAAAAACTAAGTTGAATTGAT
CCTACACTTATATAATGAAAAATTAATATTATCTTTACTATTTATATAAA
AATTATTATTTTGAAAAGACATATTTACT
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