CX069824

Overview
NameCX069824
Unique NameCX069824
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069824_ssr92 microsatellite CX069824_ssr92:92..106. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX069824 vs. ExPASy Swiss-Prot
Match: Y3684_ARATH (Acyltransferase-like protein At3g26840, chloroplastic OS=Arabidopsis thaliana GN=At3g26840 PE=1 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.750e-77
Identity = 135/207 (65.22%), Postives = 168/207 (81.16%), Query Frame = -1
Query:  183 YDTFRIMGSVPVSAINFYKLVSSKAHVLLYPGGVREAFHRKGEEYKLFWPESSEFVRVAAAFGGKIVPFGVVGEDDLAQIVVDYNDQMKIPYLRSRIEEQTEKVVSLRTDTGGEVANQAMHVPFYIPKVPGRLYYYFGKPIETKGRKQELRDKKKAQELYLQVKSEVEKCIAYLKEKRESDPYRNILSRLIHQAAHGLTSQIPTFEL 803
            +D ++IMG VPVS  N YKL+  KAHVLLYPGGVREA HRKGEEYKLFWPE SEFVRVA+ FG KIVPFGVVGEDD+ +IV+D NDQ  IP L+  +E+ T+   ++R     E+ NQ  + P  +PK+PGR YYYFGKPIET G+++EL+DK+KAQELYLQVKSEVE+CI YLK KRESDPYR++L R+++QA+HG +S+IPTF+L
Sbjct:  495 FDKYKIMGGVPVSHFNIYKLLREKAHVLLYPGGVREALHRKGEEYKLFWPERSEFVRVASKFGAKIVPFGVVGEDDICEIVLDSNDQRNIPILKDLMEKATKDAGNIREGDESELGNQECYFPGLVPKIPGRFYYYFGKPIETAGKEKELKDKEKAQELYLQVKSEVEQCIDYLKVKRESDPYRHLLPRMLYQASHGWSSEIPTFDL 701          
BLAST of CX069824 vs. ExPASy Swiss-Prot
Match: Y1457_ARATH (Acyltransferase-like protein At1g54570, chloroplastic OS=Arabidopsis thaliana GN=At1g54570 PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 6.899e-66
Identity = 118/207 (57.00%), Postives = 154/207 (74.40%), Query Frame = -1
Query:  186 DTFRIMGSVPVSAINFYKLVSSKAHVLLYPGGVREAFHRKGEEYKLFWPESSEFVRVAAAFGGKIVPFGVVGEDDLAQIVVDYNDQMKIPYLRSRIEEQTE--KVVSLRTDTGGEVANQAMHVPFYIPKVPGRLYYYFGKPIETKGRKQELRDKKKAQELYLQVKSEVEKCIAYLKEKRESDPYRNILSRLIHQAAHGLTSQIPTFE 800
            D  ++ G+ PV+A N +KL+ SK+HVLL+PGG REA H +GE+YKL WPE  EFVR+AA FG  IVPFG VGEDD+A++V+DYND MKIP L   I E T   K   LR ++ GEVANQ +++P  IPKVPGR YY FGKPIETKGR + ++DK++A ++YL+VK+EVE  IAYL +KRE DPYR++L RL +   H   + +P+FE
Sbjct:  497 DWIKVFGAYPVTATNLFKLLDSKSHVLLFPGGAREALHNRGEQYKLIWPEQQEFVRMAARFGATIVPFGTVGEDDIAELVLDYNDLMKIPILNDYITEVTRDTKQFKLREESEGEVANQPLYLPGLIPKVPGRFYYLFGKPIETKGRPELVKDKEEANQVYLEVKAEVENSIAYLLKKREEDPYRSVLDRLNYSLTHTTATHVPSFE 703          
The following BLAST results are available for this feature:
BLAST of CX069824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y3684_ARATH1.750e-7765.22Acyltransferase-like protein At3g26840, chloroplas... [more]
Y1457_ARATH6.899e-6657.00Acyltransferase-like protein At1g54570, chloroplas... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_13A10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13A10-A19-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069824 ID=CX069824; Name=CX069824; organism=Citrus sinensis; type=EST; length=812bp
TTTTTTTGTGCACAACATTTAATGTATATTATTTTTTAAAAAAAATTAAT
TACAAAGGGAACGCCTTCAAAGGTGTGGTCAAATGGCTTGGATTTTATTT
TATTTTTTTAATTGGCCACTGGAATTCAACTTAAATAAAGATAAACAAAA
GCTAAATGTAATTCTCTTTATGGTGTAAATCAAAGCTCAAATGTTGGAAT
TTGGGAGGTTAAGCCATGGGCAGCCTGGTGAATGAGCCTGGACAAAATAT
TCCTGTATGGATCACTCTCTCTTTTCTCTTTTAAATAAGCAATGCATTTC
TCAACTTCTGACTTTACTTGTAAATACAATTCCTGAGCCTTCTTCTTGTC
TCTTAATTCTTGCTTCCTCCCTTTTGTTTCAATTGGTTTTCCAAAATAAT
AATACAATCTGCCTGGAACTTTTGGTATATAAAATGGTACGTGCATTGCT
TGGTTTGCCACCTCACCACCAGTATCAGTCCTCAGACTAACAACCTTTTC
TGTCTGTTCTTCTATTCGAGACCTTAAGTAAGGGATCTTCATTTGGTCAT
TGTAATCCACAACTATTTGAGCAAGATCGTCTTCTCCAACAACACCAAAA
GGTACAATTTTGCCTCCGAATGCAGCTGCCACCCTGACAAACTCGGAACT
TTCTGGCCAGAATAACTTATATTCTTCACCCTTACGATGAAAAGCTTCTC
GTACTCCACCAGGGTAAAGCAGGACATGAGCCTTTGAAGACACAAGTTTA
TAGAAATTTATTGCAGAGACTGGAACAGAGCCCATAATTCTAAATGTATC
ATATGTTACTAA
back to top