CX069822

Overview
NameCX069822
Unique NameCX069822
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length299
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9247 contig Csv1_Contig9247:216..514. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.045e-36
Identity = 74/98 (75.51%), Postives = 78/98 (79.59%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYDSVHG WKH+ELKVKDEKTLLFGEK V VFG RNPEEIPWA+ GA++VVESTGVFT               VVISAPSKDAPMFVVGVNEKEYKPE
Sbjct:   37 KYDSVHGQWKHHELKVKDEKTLLFGEKSVRVFGIRNPEEIPWAEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPE 134          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 2.329e-36
Identity = 72/98 (73.47%), Postives = 77/98 (78.57%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYDSVHG WKHNELK+KDEKTLLFGEKPV VFG RNPE+IPWA+ GA+YVVESTGVFT               VVISAPSKDAPMFVVGVNE EYK +
Sbjct:   50 KYDSVHGQWKHNELKIKDEKTLLFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSD 147          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.188e-36
Identity = 72/98 (73.47%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYD+VHG +KH+ELKVKDEKTLLFG+KPVAVFG RNPEEIPWA+TGAEYVVESTGVFT               V+ISAPSKDAPMFVVGVNEK Y P+
Sbjct:   48 KYDTVHGQYKHHELKVKDEKTLLFGDKPVAVFGLRNPEEIPWAETGAEYVVESTGVFTEKEKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKTYTPD 145          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.776e-36
Identity = 72/98 (73.47%), Postives = 77/98 (78.57%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYDSVHG WKH+ELKVKDEKTLLFGE+PV VFG RNPEEIPW +TGA+YVVESTGVFT               V+ISAPSKDAPMFVVGVNE EYK E
Sbjct:   48 KYDSVHGQWKHHELKVKDEKTLLFGERPVTVFGNRNPEEIPWGQTGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKSE 145          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.510e-35
Identity = 71/98 (72.45%), Postives = 76/98 (77.55%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYDSVHG WKHNELKVKDEKTLLFGEKPV VFG RNPE+IPW + GA++VVESTGVFT               VVISAPSKDAPMFVVGVNE EYK +
Sbjct:   50 KYDSVHGQWKHNELKVKDEKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSD 147          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.510e-35
Identity = 70/98 (71.43%), Postives = 76/98 (77.55%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYDSVHG WKH+ELK KD+KTLLFGEKPV VFG RNPEEIPW + GA+YVVESTGVFT               V+ISAPSKDAPMFVVGVNEKEYK +
Sbjct:   48 KYDSVHGQWKHHELKAKDDKTLLFGEKPVTVFGIRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKSD 145          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.575e-35
Identity = 71/96 (73.96%), Postives = 75/96 (78.12%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYK 291
            KYDSVHG WKH+ELKVKD KTLLFGEKPV VFG RNPEEIPW +TGAE+VVESTGVFT               V+ISAPSKDAPMFVVGVNE EYK
Sbjct:   50 KYDSVHGQWKHHELKVKDSKTLLFGEKPVTVFGVRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYK 145          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.575e-35
Identity = 71/98 (72.45%), Postives = 76/98 (77.55%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYDSVHG WKH+++KVKDEKTLLFGEK V VFG RNPEEIPW  TGA+YVVESTGVFT               V+ISAPSKDAPMFVVGVNE EYKPE
Sbjct:   48 KYDSVHGQWKHHDIKVKDEKTLLFGEKAVTVFGNRNPEEIPWGGTGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKPE 145          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.575e-35
Identity = 73/98 (74.49%), Postives = 77/98 (78.57%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYDSVHG WKH+ELKVKDEKTLLFGEKPV VFG RNPEEIP A TGAEY+VESTGVFT               V+ISAPSKDAPMFVVGVNEKEYK +
Sbjct:   48 KYDSVHGAWKHHELKVKDEKTLLFGEKPVVVFGRRNPEEIPRASTGAEYIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKSD 145          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.785e-35
Identity = 71/98 (72.45%), Postives = 75/98 (76.53%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYD+VHG WKH+E+KVKD KTLLFGEK VAVFG RNPEEIPW   GAEYVVESTGVFT               VVISAPSKDAPMFVVGVNEKEYK +
Sbjct:   48 KYDTVHGQWKHHEVKVKDSKTLLFGEKEVAVFGCRNPEEIPWGSVGAEYVVESTGVFTDQEKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKSD 145          
The following BLAST results are available for this feature:
BLAST of CX069822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
G3PC_TOBAC1.045e-3675.51Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ARATH2.329e-3673.47Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_CRAPL5.188e-3673.47Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ATRNU6.776e-3673.47Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PC_SINAL1.510e-3572.45Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETHY1.510e-3571.43Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAGLI2.575e-3573.96Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_DIACA2.575e-3572.45Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ANTMA2.575e-3574.49Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PE_MAIZE9.785e-3572.45Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13A08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13A08-A15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069822 ID=CX069822; Name=CX069822; organism=Citrus sinensis; type=EST; length=299bp
CTTAAGTACGATAGTGTTCACGGTCATTGGAAGCACAACGAGTTGAAGGT
CAAGGACGAGAAGACCCTCCTCTTCGGTGAGAAGCCAGTCGCTGTTTTCG
GATTCAGGAACCCAGAGGAGATCCCATGGGCAAAGACTGGAGCCGAGTAT
GTTGTGGAATCAACTGGAGTGTTCACTGACAAGGACAAGGCTGCTGCTCA
CTTGAAGGGTGGTGCCAAGAAGGTCGTTATCTCCGCCCCTAGCAAGGATG
CTCCCATGTTTGTTGTGGGCGTCAACGAGAAAGAATACAAGCCAGAGCT
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