CX069809

Overview
NameCX069809
Unique NameCX069809
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069809_ssr722 microsatellite CX069809_ssr722:722..733. BLAST: Citrus ESTs to Populus V2 proteins
Homology
BLAST of CX069809 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.201e-66
Identity = 119/209 (56.94%), Postives = 160/209 (76.56%), Query Frame = 3
Query:   45 SLMFAMICTRSDIAQAVGAVSRYMANPGGEHWITVKRILRYIRGTSDVALCYGGSEFTVRGYVDSDFAGDLDKRKSTTGYVFALAGAAISWVSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHKQQKIPVFCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQKIHTKENLADVLTKPINADKFIWSRSSCGL 671
            SLM+AM+CTR DIA AVG VSR++ NPG EHW  VK ILRY+RGT+   LC+GGS+  ++GY D+D AGD+D RKS+TGY+F  +G AISW SKLQ  VALSTTEAEY+AAT+  KE IW++R L+ELG  Q++  V+CDSQSA+ +++N  +H+RTKHI V+YH++RE+V+D S+ + KI T EN AD+LTK +  +KF   +   G+
Sbjct: 1117 SLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325          
BLAST of CX069809 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 3.827e-43
Identity = 93/215 (43.26%), Postives = 135/215 (62.79%), Query Frame = 3
Query:   48 LMFAMICTRSDIAQAVGAVSRYMANPGGEHWITVKRILRYIRGTSDVALCYGGS---EFTVRGYVDSDFAGDLDKRKSTTGYVFALAGA-AISWVSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHK-QQKIPVFCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQKIHTKENLADVLTKPINADKFIWSRSSCGLAE 677
            LM+ M+CTR D+  AV  +SRY +    E W  +KR+LRY++GT D+ L +  +   E  + GYVDSD+AG    RKSTTGY+F +     I W +K Q  VA S+TEAEYMA  +A +EA+W++ LL  +  K +  I ++ D+Q  + IA NP+ H R KHI ++YHF RE V++  + L+ I T+  LAD+ TKP+ A +F+  R   GL +
Sbjct: 1188 LMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLLQ 1402          
BLAST of CX069809 vs. ExPASy Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.193e-13
Identity = 44/113 (38.94%), Postives = 61/113 (53.98%), Query Frame = 3
Query:   69 TRSDIAQAVGAVSRYMANPGGEHWITVKRILRYIRGTSDVAL-CYGGSEFTVRGYVDSDFAGDLDKRKSTTGYVFALAGAAISWVSKLQTVVALSTTEAEYMAATQACKEAIW 404
            TR DI+ AV  V + M  P    +  +KR+LRY++GT    L  +  S+  V+ + DSD+AG    R+STTG+   L    ISW +K Q  V+ S+TE EY A      E  W
Sbjct:  113 TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225          
BLAST of CX069809 vs. ExPASy Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae GN=TY5A PE=4 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.675e-12
Identity = 43/118 (36.44%), Postives = 65/118 (55.08%), Query Frame = 3
Query:   48 LMFAMICTRSDIAQAVGAVSRYMANPGGEHWITVKRILRYIRGTSDVALCY-GGSEFTVRGYVDSDFAGDLDKRKSTTGYVFALAGAAISWVS-KLQTVVALSTTEAEYMAATQACKE 395
            L+F     R DI+  V  +SR++  P   H  + +R+LRY+  T  + L Y  GS+  +  Y D+      D   ST GYV  LAGA ++W S KL+ V+ + +TEAEY+ A++   E
Sbjct:  190 LLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYRSGSQLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYITASETVME 307          
The following BLAST results are available for this feature:
BLAST of CX069809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
POLX_TOBAC4.201e-6656.94Retrovirus-related Pol polyprotein from transposon... [more]
COPIA_DROME3.827e-4343.26Copia protein OS=Drosophila melanogaster GN=GIP PE... [more]
M810_ARATH9.193e-1338.94Uncharacterized mitochondrial protein AtMg00810 OS... [more]
YCH4_YEAST2.675e-1236.44Putative transposon Ty5-1 protein YCL074W OS=Sacch... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_12H09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12H09-P18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069809 ID=CX069809; Name=CX069809; organism=Citrus sinensis; type=EST; length=830bp
TACCGCGGCCCCCCCTCGAGTTCCGTATGCATCAGCAGCGTTTAAGTTTG
ATGTTCGCTATGATATGTACTAGATCGGACATTGCACAAGCAGTGGGAGC
AGTCAGTCGATACATGGCGAATCCTGGTGGAGAGCATTGGATAACTGTGA
AGAGGATTCTGAGATACATCAGAGGAACCTCAGATGTTGCATTATGTTAT
GGAGGATCAGAGTTTACTGTCAGGGGCTATGTGGATTCAGATTTTGCAGG
AGACCTTGATAAAAGGAAATCCACTACTGGTTATGTGTTTGCACTTGCGG
GAGCAGCTATAAGCTGGGTTTCGAAACTGCAGACCGTTGTGGCTTTATCT
ACAACAGAAGCAGAGTACATGGCAGCTACACAAGCTTGCAAGGAAGCTAT
TTGGATACAAAGGTTATTGGAGGAGCTCGGGCACAAACAACAGAAAATTC
CTGTGTTTTGTGACAGTCAGAGTGCCTTGCACATTGCAAGGAATCCAGCC
TTTCATTCCAGGACAAAACACATAGGAGTCCAGTATCACTTCGTTCGTGA
AGTAGTGGAAGATGGAAGTGTGGATTTACAGAAAATCCATACGAAGGAGA
ACCTAGCAGATGTTTTGACCAAGCCGATAAATGCTGACAAGTTTATCTGG
AGTAGATCCTCTTGTGGCCTAGCAGAAACGTAGGCAACATGATTATGGCG
AAGCAGAAAGGATGATGTGGAGATTGATTGATTTTCAATCTAATCTCCAA
GTGGGAGAATGTCAAAATACTTTGGCTGCAGCATCTAGAAGCTGCATCTA
GAAGCTTTGAATAAGCTTCATTGGTGGCAC
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