CX069806

Overview
NameCX069806
Unique NameCX069806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4311 contig Csv1_Contig4311:4..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069806 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.123e-21
Identity = 81/272 (29.78%), Postives = 122/272 (44.85%), Query Frame = -3
Query:   35 KVPPSDDPITGVRSKDVISSQPT-VSARIFIPK----------VTNP-DKQKFPLLLYMHGGGF*TLSAFAKPYHDFCNTISSQANAIVVSVEYGLFPDRPIPACYEGSWAALKWVASHVSGNGPDPWLNHHADLG-RVFIGGDSAGGNIAHTLAFRVGSIGLSGVNLVRVTMVHPFFGGTE----------------DDEMWLYMCANNDG-----PQDPRMKPPAEDLARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVE 748
            KVP + +P+ GV S DVI  + T + +R++ P           + NP D +  P++++ HGG F   SA +  Y   C  +     A+VVSV Y   P+   P  Y+  WA LKWV S         WL    D   R+F+ GDS+GGNI H +A R      S ++++   +++P FGGTE                 D  W +     +G     P      P ++ L  L   + L+ VA  D +      Y E LKK G + ++  +E
Sbjct:   52 KVPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNS-------SSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE---SRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAGQEVKLLYLE 313          
BLAST of CX069806 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.176e-21
Identity = 78/265 (29.43%), Postives = 113/265 (42.64%), Query Frame = -3
Query:   62 KVPPSDDPITGVRSKDVISSQPTVSARIFIP------------KVTNP--DKQKFPLLLYMHGGGF*TLSAFAKPYHDFCNTISSQANAIVVSVEYGLFPDRPIPACYEGSWAALKWVASHVSGNGPDPWLNHHADLG-RVFIGGDSAGGNIAHTLAFRVGSIGLSGVNLVRVTMVHPFFGGTE----------------DDEMWLYMC-----ANNDGPQDPRMKPPAEDLARLGCERVLIFVAERDYLCPAGKNYYEELKKRG 748
            KVP +  P+ GV S D + S   +  RI+ P            ++T P    +  P+L++ HGG F   SA +  Y  FC  + +    +VVSV+Y   P+   P  Y+  W AL WV S V       WL    D    V++ GDS+GGNIAH +A R  +    GV ++   ++HP FGG E                 D  W +        + D P      P  + L  +   + L+ VA  D +      Y + LKK G
Sbjct:   52 KVPANSFPLDGVFSFDHVDSTTNLLTRIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRV-------WLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATN---EGVKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTG 306          
BLAST of CX069806 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.347e-20
Identity = 83/285 (29.12%), Postives = 125/285 (43.86%), Query Frame = -3
Query:    5 KVPPSDDPITGVRSKDV-ISSQPTVSARIFIPKVTNPDKQK-------------FPLLLYMHGGGF*TLSAFAKPYHDFCNTISSQANAIVVSVEYGLFPDRPIPACYEGSWAALKWVASHVSGNGPDPWLNHHADLG-RVFIGGDSAGGNIAHTLAFRVGSIGLSGVNLVRVTMVHPFFGGTE----------------DDEMWLYMCANNDG-----PQDPRMKPPAEDLARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHV-FYL 748
            KV  + +P+ GV S DV I  +  + +R++ P   + ++                P++L+ HGG F   SA +  Y   C  +      +VVSV Y   P+ P P  Y+  W AL WV S         WL    D    +F+ GDS+GGNIAH +A R G    SG++++   +++P FGG E                 D  W +     +G     P      P  + L  +   + L+ VA  D +      Y E LKK G +  V+L+ HL++  V FYL
Sbjct:   52 KVTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSR-------SWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE---SGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAGQE--VKLM-HLEKATVGFYL 323          
BLAST of CX069806 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.550e-19
Identity = 80/282 (28.37%), Postives = 113/282 (40.07%), Query Frame = -3
Query:   32 KVPPSDDPITGVRSKDVISSQPT-VSARIF-----------IPKVTNP---------DKQKFPLLLYMHGGGF*TLSAFAKPYHDFCNTISSQANAIVVSVEYGLFPDRPIPACYEGSWAALKWVASHVSGNGPDPWLNHHADL-GRVFIGGDSAGGNIAHTLAFRVGSIGLSGVNLVRVTMVHPFFGGTE----------------DDEMWLYMC-----ANNDGPQDPRMKPPAEDLARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEH 748
            +VP +  P+ GV S D I  Q   +  RI+              VT P           + FP++++ HGG F   SA +  Y   C      +  +VVSV Y   P+   P  Y+  W ALKWV S        P++    D   RVF+ GDS+GGNIAH +A R       GV +    +++  FGGTE                 D  W +       A+ D P      P    L  L   + LI V+  D  C     Y + L++ G   +V   E+
Sbjct:   52 RVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS-------QPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAAD---EGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALREDGHHVKVVQCEN 323          
BLAST of CX069806 vs. ExPASy Swiss-Prot
Match: YFZ3_SCHPO (AB hydrolase superfamily protein C1039.03 OS=Schizosaccharomyces pombe GN=SPAC1039.03 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.240e-12
Identity = 47/145 (32.41%), Postives = 71/145 (48.97%), Query Frame = -3
Query:  245 VSARIFIPKVTNPDKQKFPLLLYMHGGGF*TLSAFAKPYHDFCNTISSQANAIVVSVEYGLFPDRPIPACYEGSWAALKWVASHVSGNGPDPWLNHHADLGRVFIGGDSAGGNIAHTLAFRVGSIGLSGVNLVRVTMVHPFFGGT 679
            V +RIF P  T P+   +P  L+ HGGG+  +       + F   +  QA  +VV+V+Y L P+ P PAC +  W AL +   +    G +P         ++ +GG SAGGNIA  L+ +V +   +   LV   +V P    T
Sbjct:   84 VPSRIFRPHGTAPEGG-WPCFLWFHGGGW--VLGNINTENSFATHMCEQAKCVVVNVDYRLAPEDPFPACIDDGWEALLYCYENADTLGINP--------NKIAVGGSSAGGNIAAVLSHKVAASPANFPPLVLQLLVVPVCDNT 217          
The following BLAST results are available for this feature:
BLAST of CX069806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GI1L3_ARATH2.123e-2129.78Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L2_ARATH6.176e-2129.43Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L1_ARATH2.347e-2029.12Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GID1_ORYSJ7.550e-1928.37Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
YFZ3_SCHPO5.240e-1232.41AB hydrolase superfamily protein C1039.03 OS=Schiz... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_12H06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12H06-P12-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069806 ID=CX069806; Name=CX069806; organism=Citrus sinensis; type=EST; length=768bp
TTCTCAAATAAAAGACATGCTTCTCATCGAGATGCTCAACGAGCTCCACT
CTCCCTTTCCATCCACGTTTCTTCAACTCCTCGTAGTAATTTTTCCCAGC
GGGACACAAGTAGTCTCTCTCAGCCACAAATATCAAAACCCTCTCACACC
CAAGCCTAGCCAGATCCTCTGCGGGCGGTTTCATCCTAGGATCCTGCGGC
CCATCATTATTTGCGCACATGTACAACCACATCTCATCGTCCTCCGTACC
GCCAAAAAATGGGTGTACCATCGTCACCCTAACCAAGTTCACACCTGATA
GCCCGATTGATCCGACCCGGAACGCCAGAGTGTGTGCGATGTTCCCTCCT
GCACTGTCCCCACCAATGAAAACTCTCCCAAGATCAGCATGATGATTCAA
CCATGGGTCAGGTCCGTTTCCGCTAACATGGGACGCCACCCACTTGAGTG
CAGCCCACGAGCCTTCGTAACAAGCGGGTATGGGTCGATCCGGGAAGAGT
CCGTACTCCACGGACACCACTATGGCATTCGCTTGGGAAGAAATGGTGTT
ACAGAAATCATGATAGGGCTTCGCAAAGGCGGATAACGTTCAGAATCCAC
CGCCATGCATGTAGAGTAAGAGAGGGAACTTTTGTTTATCAGGGTTTGTT
ACTTTAGGAATGAAAATACGGGCGGATACAGTTGGTTGAGATGAAATAAC
ATCTTTGGATCGGACGCCGGTGATGGGGTCATCGGACGGTGGAACTTTGA
CGCACGGGGGTCGGAAGA
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