CX069794

Overview
NameCX069794
Unique NameCX069794
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10547 contig Csv1_Contig10547:70..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: RCE1_ARATH (NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.568e-91
Identity = 160/184 (86.96%), Postives = 171/184 (92.93%), Query Frame = 3
Query:   33 MIKLFKVKEKQRENAENAN-GKTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 581
            MI LFKVKEKQRE A+NA  G   VKKQSAGELRLH+DISELNLP +CSI+FPNGKDDLMNFEVSI+PD+GYY  GTFVFTFQVSP+YPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINT+IYGLFHLFT+PN EDPLNH+AAAVLRDNPKLFE+NVRRAM GGYVGQTFF RCI
Sbjct:    1 MIGLFKVKEKQREQAQNATRGGASVKKQSAGELRLHKDISELNLPSSCSISFPNGKDDLMNFEVSIKPDDGYYHNGTFVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRDNPKLFETNVRRAMTGGYVGQTFFPRCI 184          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 6.816e-87
Identity = 152/185 (82.16%), Postives = 169/185 (91.35%), Query Frame = 3
Query:   33 MIKLFKVKEKQRENAENANGK--TPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 581
            MI LFKVKEKQRE +++ NG+  + VKKQSAGELRLH+DISELNLPK+C I+FPNGK+DLMNFEV+I+PDEGYY+ G FVF+FQVS +YPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINT+IYGLFHLFT+PNYEDPLNHEAAAVLRDNPK FE NVRRAM GG VGQT F RC+
Sbjct:    1 MIGLFKVKEKQREESQSNNGRGASTVKKQSAGELRLHKDISELNLPKSCKISFPNGKNDLMNFEVTIKPDEGYYLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPKTFEYNVRRAMMGGQVGQTSFPRCM 185          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.806e-63
Identity = 115/183 (62.84%), Postives = 144/183 (78.69%), Query Frame = 3
Query:   33 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 581
            MIKLF +K++++E       K   KK SA +LR+ +DI+ELNLPKTC I F +  DDL+NF++ I PDEG+Y GG FVF+F+V   YPH+ PKVKC+T VYHPNIDLEGNVCLNILREDWKPVL IN+IIYGL +LF +PN EDPLN EAA VL++N +LFE NV+R+M GGY+G T+F RC+
Sbjct:    1 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCEIEFSD-HDDLLNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL 182          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.806e-63
Identity = 115/183 (62.84%), Postives = 144/183 (78.69%), Query Frame = 3
Query:   33 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 581
            MIKLF +K++++E       K   KK SA +LR+ +DI+ELNLPKTC I F +  DDL+NF++ I PDEG+Y GG FVF+F+V   YPH+ PKVKC+T VYHPNIDLEGNVCLNILREDWKPVL IN+IIYGL +LF +PN EDPLN EAA VL++N +LFE NV+R+M GGY+G T+F RC+
Sbjct:    1 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDITELNLPKTCEIEFSD-HDDLLNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL 182          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 5.255e-63
Identity = 114/183 (62.30%), Postives = 144/183 (78.69%), Query Frame = 3
Query:   33 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 581
            MIKLF +K++++E       K   KK SA +LR+ +DI+ELNLPKTC I+F +  DDL+NF++ I PDEG+Y  G FVF+F+V   YPH+ PKVKC+T VYHPNIDLEGNVCLNILREDWKPVL IN+IIYGL +LF +PN EDPLN EAA VL++N +LFE NV+R+M GGY+G T+F RC+
Sbjct:    1 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL 182          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 5.255e-63
Identity = 114/183 (62.30%), Postives = 144/183 (78.69%), Query Frame = 3
Query:   33 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 581
            MIKLF +K++++E       K   KK SA +LR+ +DI+ELNLPKTC I+F +  DDL+NF++ I PDEG+Y  G FVF+F+V   YPH+ PKVKC+T VYHPNIDLEGNVCLNILREDWKPVL IN+IIYGL +LF +PN EDPLN EAA VL++N +LFE NV+R+M GGY+G T+F RC+
Sbjct:    1 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL 182          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 5.255e-63
Identity = 114/183 (62.30%), Postives = 144/183 (78.69%), Query Frame = 3
Query:   33 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 581
            MIKLF +K++++E       K   KK SA +LR+ +DI+ELNLPKTC I+F +  DDL+NF++ I PDEG+Y  G FVF+F+V   YPH+ PKVKC+T VYHPNIDLEGNVCLNILREDWKPVL IN+IIYGL +LF +PN EDPLN EAA VL++N +LFE NV+R+M GGY+G T+F RC+
Sbjct:    1 MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSD-PDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL 182          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.648e-58
Identity = 107/183 (58.47%), Postives = 141/183 (77.05%), Query Frame = 3
Query:   33 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 581
            MIKLF +K+++++  +  + +   KK SA +LR+ +DI+ELNLP TC+  FP+  +DL+NF++ I PDEG+Y  G FVF F+V   YPHE PKVKC T+VYHPNIDL+GNVCLNILREDW PVLNIN+I+YGL  LF +PN EDPLN EAA VL+ N + FE+NV++AM GG VG+T+F  C+
Sbjct:    1 MIKLFTLKQQKKDGEQKGSQQ---KKASAAQLRIQKDINELNLPNTCATDFPD-PNDLLNFKLIISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQFENNVKKAMRGGCVGETYFECCL 179          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC12_YARLI (NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica GN=UBC12 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.343e-50
Identity = 98/179 (54.75%), Postives = 132/179 (73.74%), Query Frame = 3
Query:   33 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYV-GQTF 566
            M+K++ +KEKQ      A G +  KK +A +LR+ +D+SEL+LP T    FP+  +D+MNFE+++RPDEG+Y GG F F+F V+P +PHE PKVKC  KVYHPNIDLEGNVCLNILREDWKPVL++N ++ GL +LF +PN  DPLN +AA  +  N + F+ NV+ +MAGG V G+ F
Sbjct:    1 MLKIWSMKEKQA-----AEGGSAKKKVTAAQLRVQKDLSELSLPSTMKTHFPSA-EDIMNFELTVRPDEGFYQGGEFRFSFYVNPNFPHEPPKVKCLQKVYHPNIDLEGNVCLNILREDWKPVLSLNAVMIGLQYLFLEPNASDPLNKDAAHQMTANREEFKRNVKHSMAGGSVAGERF 173          
BLAST of CX069794 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.897e-45
Identity = 90/180 (50.00%), Postives = 125/180 (69.44%), Query Frame = 3
Query:   33 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPNG-KDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFF 569
            M K++++K+K+ +  +NA+G +P       ++R+ +D+++L +P T S ++P+  K ++++ E  IRPDEGYY GG F F  Q+   YPH+ PKVKC  K+YHPNID+EGNVCLNILR+DW PVLN+N+I+ GL  LF  PN EDPLN EAAA L  +P+ F S VR AM GG V    F
Sbjct:    1 MRKIWELKKKEAQKEKNASGISPA------QIRIQKDVTDLEIPSTMSTSWPDPIKLNVLHLE--IRPDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVRTAMKGGLVNGISF 172          
The following BLAST results are available for this feature:
BLAST of CX069794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
RCE1_ARATH1.568e-9186.96NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thal... [more]
UB12L_ARATH6.816e-8782.16Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
UBC12_XENTR1.806e-6362.84NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBC12_XENLA1.806e-6362.84NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UBC12_MOUSE5.255e-6362.30NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN5.255e-6362.30NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_BOVIN5.255e-6362.30NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UBC12_DROME6.648e-5858.47NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
UBC12_YARLI1.343e-5054.75NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolyt... [more]
UBC12_SCHPO2.897e-4550.00NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12G10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12G10-N20-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069794 ID=CX069794; Name=CX069794; organism=Citrus sinensis; type=EST; length=794bp
ATCCCCTGCAGCTTAACTCTTAAGCAGGAAAAATGATTAAGCTGTTCAAA
GTCAAGGAGAAGCAAAGGGAAAATGCCGAAAATGCCAATGGGAAGACACC
TGTCAAGAAGCAAAGTGCTGGAGAATTGCGTCTTCATAGAGACATCAGTG
AACTGAACCTACCCAAAACTTGCAGCATAACATTTCCCAATGGCAAGGAT
GACTTGATGAACTTCGAGGTTTCCATTAGGCCTGACGAAGGATATTATGT
AGGTGGTACATTTGTGTTTACTTTCCAAGTATCTCCCATCTACCCTCATG
AGGCACCAAAGGTCAAATGCAAGACAAAGGTTTACCACCCCAATATCGAC
CTGGAGGGAAACGTCTGCCTCAACATTTTAAGAGAAGACTGGAAACCGGT
TCTGAATATAAACACCATCATTTATGGACTCTTCCATCTTTTCACGCAAC
CCAATTATGAGGATCCCCTCAATCATGAAGCAGCAGCTGTTTTAAGGGAT
AACCCAAAACTGTTTGAATCCAATGTTAGAAGAGCAATGGCTGGTGGATA
TGTGGGGCAAACCTTCTTCATTCGGTGCATATAATTGCTTTTGCCTGGAA
ATGCATGTTGCTTTGAAGGTAAGGAGCTGTAAATTTGGTCGCAGGGCTGC
TTCAATTTCTAGTAATGTGTTGGGACAAAAAATTCTAAGAATCATGCAAA
GGGAGTCAGAATGTTTGTATGCTGCTGTAACTTTGTTGTGTGTTTGTGAT
ATTGGCTGAGAACAAAATTATTTCCCTTAAAAAAAAAAAAAAAA
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