CX069789

Overview
NameCX069789
Unique NameCX069789
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069789 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.291e-16
Identity = 70/279 (25.09%), Postives = 120/279 (43.01%), Query Frame = -3
Query:    2 CFKCGQKVHWKNDCPKIVKS----------------CRGNLFVI------EVCL-VQNPIDTWVLD*GATNHICNSLYWFQDTRKISEESVKLQLGTGQFVSAVKTGSVLLSFNNNETLVLNNCLYVPDIKRNLISVTCLSKQGYTINFGSSV-SIFHNKRLICSGTLEDNLYHSSPMIHSIHDTVINNDEHTHLSKKRNISSNQCYL*HLRLGHINQNRIQRMIKDRLLGQLENESLPLCESCLEGKMTKRSFSAKRVRATVPFELVHTDVCGPINVQ 766
            C+ C Q  H+K DCP   K                  + N  V+      E C+ +  P   WV+D  A++H       F   R ++ +   +++G   +      G + +  N   TLVL +  +VPD++ NLIS   L + GY   F +    +     +I  G     LY ++     I    +N       + +  IS +   L H R+GH+++  +Q + K  L+   +  ++  C+ CL GK  + SF     R     +LV++DVCGP+ ++
Sbjct:  232 CYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVVDTAASHHATPVRDLF--CRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNA---EICQGELN-------AAQDEISVD---LWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIE 495          
BLAST of CX069789 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.631e-15
Identity = 81/286 (28.32%), Postives = 133/286 (46.50%), Query Frame = -3
Query:   11 DGKPKGKCFKCGQKVHWKNDC--------------PKIVKSC--RGNLFVIEVCLVQNPIDT--WVLD*GATNHICNSLYWFQDTRKISEESVKLQLGTGQFVSAVKTGSVLLSFNNNETLVLNNCLYVPDIKRNLISVTCLSKQGYTINFG-SSVSIFHNKRLICSGTLEDNLYHSSPMIHSIHDTVINNDEHTHLSKKRNISSNQCYL*HLRLGHINQNRI-----QRMIKDR-LLGQLENESLPLCESCLEGKMTKRSFSAKRVRATV--PFELVHTDVCGPI 787
            + K K KC  CG++ H K DC               K V++    G  F+++     + +D   +VLD GA++H+ N    + D+ ++           G+F+ A K G V L   N+  + L + L+  +   NL+SV  L + G +I F  S V+I  N  ++           +S M++++   VIN   ++  +K +    N   L H R GHI+  ++     + M  D+ LL  LE  S  +CE CL GK  +  F   + +  +  P  +VH+DVCGPI
Sbjct:  225 NSKYKVKCHHCGREGHIKKDCFHYKRILNNKNKENEKQVQTATSHGIAFMVKEVNNTSVMDNCGFVLDSGASDHLINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRGIVRL--RNDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVK---------NSGMLNNV--PVINFQAYSINAKHK----NNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLE-LSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPI 492          
The following BLAST results are available for this feature:
BLAST of CX069789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
POLX_TOBAC4.291e-1625.09Retrovirus-related Pol polyprotein from transposon... [more]
COPIA_DROME1.631e-1528.32Copia protein OS=Drosophila melanogaster GN=GIP PE... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_12G08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12G08-N16-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069789 ID=CX069789; Name=CX069789; organism=Citrus sinensis; type=EST; length=873bp
CTTGTACATTGATTGGTCCACATACATCTGTATGTACCAATTCAAATGGT
ACTGTTGCACGTACTCTTTTGGCCGAGAATGACCTTTTGGTCATTTTCCC
TTCTAAACAGGATTCACAGAGTGGCAATGATTCATTTTCTAATTGACCCA
AGAGCCTATCTTTGATCATTCTCTGTATCCTATTTTGGTTTATATGACCC
AAGCGTAAATGCTAGAGGTAACATTGGTTGGAAGAAATATTTCTTTTTTT
AGATAAATGTGTATGCTCATCATTATTGATCACTGTGTCATGTATAGAAT
GGATCATTGGACTTGAATGATATAAATTATCTTCCAATGTACCAGAACAA
ATAAGTCTCTTATTATGAAAAATAGAAACAGAGGATCCAAAATTTATAGT
GTACCCTTGCTTTGATAAACAAGTTACTGAAATTAAATTCCTCTTAATGT
CTGGAACATAAAGACAATTATTCAAAACTAAAGTTTCATTATTATTAAAA
GATAATAAAACAGATCCAGTCTTCACTGCTGACACGAACTGTCCTGTCCC
TAGCTGCAGCTTGACGCTTTCTTCACTTATTTTCCTGGTGTCCTGAAACC
AATAAAGTGAATTACAAATATGATTAGTTGCTCCTTAATCCAACACCCAA
GTGTCAATAGGATTCTGAACTAAACAGACCTCAATTACAAAAAGATTTCC
CCTACATGATTTCACAATCTTAGGGCAATCATTTTTCCAGTGAACTTTCT
GTCCACACTTAAAGCATTTGCCTTTCGGCTTGCCATCTTGCTTGGTAGAC
AATTTCTTTTTCCCAGCTTTCTTCTTACTTTTGCCTTTCGGCTTAGGCCT
AAAAGATGAACTTTTTACAATAA
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