CX069788

Overview
NameCX069788
Unique NameCX069788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069788_ssr723 microsatellite CX069788_ssr723:723..738. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4567 contig Csv1_Contig4567:1230..2056. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069788 vs. ExPASy Swiss-Prot
Match: SUBL_ARATH (Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.380e-85
Identity = 155/219 (70.78%), Postives = 181/219 (82.65%), Query Frame = 3
Query:    3 CPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLADFNYPSFAVNIETAQSSSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTV-SSMPSNTNSFAHLEWSDGKYIVGSPIAISW 656
            CPHVSGLAALLK+ HPEWSPAAIRSALMTTAY +YK+G+ L DIATGK STPFDHGAGHV+P +A NPGL+YDLT +DYLGFLCALNYT+ QI S++RR +TCD SK YS+AD NYPSFAVN++      G    KYTR++T+VG  GTY V +TS T  GVKISVEPA L+F +ANEKKSYTVTFTV SS PS +NSF  +EWSDGK++VGSP+AISW
Sbjct:  545 CPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAVNVD------GVGAYKYTRTVTSVGGAGTYSVKVTSET-TGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKPSGSNSFGSIEWSDGKHVVGSPVAISW 756          
BLAST of CX069788 vs. ExPASy Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.787e-32
Identity = 84/218 (38.53%), Postives = 116/218 (53.21%), Query Frame = 3
Query:    3 CPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLADFNYPSFAVNIETAQSSSGSSVLKYTRSLTNVGP-PGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTVSSMPSNTNSFAHLEWSDGKYIVGSPIAIS 653
            CPH++G+A  +K  +P WSPAAI+SALMTTA  S  N       A       F +G+GHVNP+ A+ PGLVYD    DY+ FLC   Y    +  +      C +     + D NYPSF +++  +Q+ +      + R+LT+V P   TY+  I  S   G+ ISV P  LSF    ++KS+T+  TV          A L WSDG + V SPI I+
Sbjct:  528 CPHITGIATYVKTYNPTWSPAAIKSALMTTA--SPMN-------ARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFN----QYFNRTLTSVAPQASTYRAMI--SAPQGLTISVNPNVLSFNGLGDRKSFTL--TVRGSIKGFVVSASLVWSDGVHYVRSPITIT 728          
BLAST of CX069788 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.551e-28
Identity = 76/219 (34.70%), Postives = 120/219 (54.79%), Query Frame = 3
Query:    3 CPHVSGLAALLKAAHPEWSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLA--DFNYPSFAVNIETAQSSSGSSVLKYTRSLTNVGPPGTYKVFITSSTGP-GVKISVEPATLSFTQANEKKSYTVTFTVSSMPSNTNSFAHLEWSDGKYIVGSPIAI 650
            CPHV+G+AA +K+ HP+W+PAAI+SA++T+A    +   K            F +G G +NP  A +PGLVYD+    Y+ FLC   Y A+ +  L   +    +S    L     NYP+  + + +A++   S++  + R +TNVGPP +  V+  +   P GV+I+VEP +LSF++A++K+S+ V      M         L W   ++ V SPI I
Sbjct:  539 CPHVAGVAAYVKSFHPDWTPAAIKSAIITSAKPISRRVNK---------DAEFAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSIVPGLGHDSLNYPTIQLTLRSAKT---STLAVFRRRVTNVGPPSS--VYTATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKAKQMTPGKIVSGLLVWKSPRHSVRSPIVI 743          
The following BLAST results are available for this feature:
BLAST of CX069788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SUBL_ARATH1.380e-8570.78Subtilisin-like protease OS=Arabidopsis thaliana G... [more]
CUCM1_CUCME8.787e-3238.53Cucumisin OS=Cucumis melo PE=1 SV=1[more]
XSP1_ARATH1.551e-2834.70Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_12G07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12G07-N14-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069788 ID=CX069788; Name=CX069788; organism=Citrus sinensis; type=EST; length=827bp
CTTGCCCCCATGTAAGTGGGCTCGCAGCCTTGCTCAAAGCCGCTCATCCT
GAATGGAGCCCTGCAGCTATAAGGTCAGCTCTCATGACAACAGCTTATGT
CTCGTACAAAAATGGCCAGAAATTGCAAGATATCGCTACGGGAAAAGCAT
CCACACCGTTTGATCATGGTGCTGGACACGTTAATCCAGTATCAGCCCTT
AATCCCGGGTTGGTTTACGATCTAACGGTTGACGATTATCTGGGCTTCCT
CTGCGCATTAAATTACACCGCGTCACAAATCAACAGCCTTGCTAGAAGGA
AATTCACATGCGACGCTAGCAAAAGATACAGCCTCGCTGACTTCAATTAT
CCTTCATTTGCTGTCAATATTGAAACCGCACAAAGTAGCAGTGGGTCTAG
TGTTTTGAAATACACCCGCTCTCTTACAAACGTGGGCCCACCAGGGACAT
ACAAAGTGTTTATAACATCATCAACAGGGCCTGGAGTTAAGATTTCAGTT
GAGCCAGCAACGTTGAGTTTCACTCAAGCGAACGAGAAGAAATCATATAC
GGTGACATTCACTGTTAGTTCAATGCCATCAAATACCAACAGCTTTGCTC
ATCTTGAGTGGTCAGATGGGAAGTACATTGTTGGAAGTCCCATTGCGATC
AGCTGGAATTAAATTGTTATCCAGCTAAACAAACGGATTGCTGGGTCTAG
TGTTAAATTAATGTTGTTCTGTGAGAGAGAGAGAGAGACAGAGTGGAAAA
CCAAGGAATGGGTAGCTATTTTTCTTTCTCAGTGCACAGTGTTATTATTT
TATGTTGACTACATGTGTATTTGCTGT
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