CX069787

Overview
NameCX069787
Unique NameCX069787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069787_ssr195 microsatellite CX069787_ssr195:195..210. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4567 contig Csv1_Contig4567:1281..2161. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069787 vs. ExPASy Swiss-Prot
Match: SUBL_ARATH (Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 8.363e-76
Identity = 140/202 (69.31%), Postives = 165/202 (81.68%), Query Frame = -3
Query:  277 WSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLADFNYPSFAVNIETAQSSSGSSVLKYTRSLTNVGPPGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTV-SSMPSNTNSFAHLEWSDGKYIVGSPIAISW 879
            WSPAAIRSALMTTAY +YK+G+ L DIATGK STPFDHGAGHV+P +A NPGL+YDLT +DYLGFLCALNYT+ QI S++RR +TCD SK YS+AD NYPSFAVN++      G    KYTR++T+VG  GTY V +TS T  GVKISVEPA L+F +ANEKKSYTVTFTV SS PS +NSF  +EWSDGK++VGSP+AISW
Sbjct:  562 WSPAAIRSALMTTAYKTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAVNVD------GVGAYKYTRTVTSVGGAGTYSVKVTSET-TGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKPSGSNSFGSIEWSDGKHVVGSPVAISW 756          
BLAST of CX069787 vs. ExPASy Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.077e-26
Identity = 77/201 (38.31%), Postives = 104/201 (51.74%), Query Frame = -3
Query:  280 WSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLADFNYPSFAVNIETAQSSSGSSVLKYTRSLTNVGP-PGTYKVFITSSTGPGVKISVEPATLSFTQANEKKSYTVTFTVSSMPSNTNSFAHLEWSDGKYIVGSPIAIS 879
            WSPAAI+SALMTTA  S  N       A       F +G+GHVNP+ A+ PGLVYD    DY+ FLC   Y    +  +      C +     + D NYPSF +++  +Q+ +      + R+LT+V P   TY+  I  S   G+ ISV P  LSF    ++KS+T+  TV          A L WSDG + V SPI I+
Sbjct:  545 WSPAAIKSALMTTA--SPMN-------ARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFN----QYFNRTLTSVAPQASTYRAMI--SAPQGLTISVNPNVLSFNGLGDRKSFTL--TVRGSIKGFVVSASLVWSDGVHYVRSPITIT 728          
BLAST of CX069787 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.886e-21
Identity = 66/202 (32.67%), Postives = 105/202 (51.98%), Query Frame = -3
Query:  283 WSPAAIRSALMTTAYVSYKNGQKLQDIATGKASTPFDHGAGHVNPVSALNPGLVYDLTVDDYLGFLCALNYTASQINSLARRKFTCDASKRYSLA--DFNYPSFAVNIETAQSSSGSSVLKYTRSLTNVGPPGTYKVFITSSTGP-GVKISVEPATLSFTQANEKKSYTVTFTVSSMPSNTNSFAHLEWSDGKYIVGSPIAI 879
            W+PAAI+SA++T+A    +   K            F +G G +NP  A +PGLVYD+    Y+ FLC   Y A+ +  L   +    +S    L     NYP+  + + +A++   S++  + R +TNVGPP +  V+  +   P GV+I+VEP +LSF++A++K+S+ V      M         L W   ++ V SPI I
Sbjct:  556 WTPAAIKSAIITSAKPISRRVNK---------DAEFAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSIVPGLGHDSLNYPTIQLTLRSAKT---STLAVFRRRVTNVGPPSS--VYTATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKAKQMTPGKIVSGLLVWKSPRHSVRSPIVI 743          
The following BLAST results are available for this feature:
BLAST of CX069787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SUBL_ARATH8.363e-7669.31Subtilisin-like protease OS=Arabidopsis thaliana G... [more]
CUCM1_CUCME6.077e-2638.31Cucumisin OS=Cucumis melo PE=1 SV=1[more]
XSP1_ARATH5.886e-2132.67Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_12G07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12G07-N14-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069787 ID=CX069787; Name=CX069787; organism=Citrus sinensis; type=EST; length=881bp
CTTTTTTTCACTAACAAGAAGCAGACAAGTTATTGATACATTTATGAATA
GTTCTCACAACTCTAATCTTTAACATAATCCACTGTCGATCCACTAGACA
TGCATACAGCAAATACACATGTAGTCAACATAAAATAATAACACTGTGCA
CTGAGAAAGAAAAATAGCTACCCATTCCTTGGTTTTCCACTCTGTCTCTC
TCTCTCTCTCACAGAACAACATTAATTTAACACTAGACCCAGCAATCCGT
TTGTTTAGCTGGATAACAATTTAATTCCAGCTGATCGCAATGGGACTTCC
AACAATGTACTTCCCATCTGACCACTCAAGATGAGCAAAGCTGTTGGTAT
TTGATGGCATTGAACTAACAGTGAATGTCACCGTATATGATTTCTTCTCG
TTCGCTTGAGTGAAACTCAACGTTGCTGGCTCAACTGAAATCTTAACTCC
AGGCCCTGTTGATGATGTTATAAACACTTTGTATGTCCCTGGTGGGCCCA
CGTTTGTAAGAGAGCGGGTGTATTTCAAAACACTAGACCCACTGCTACTT
TGTGCGGTTTCAATATTGACAGCAAATGAAGGATAATTGAAGTCAGCGAG
GCTGTATCTTTTGCTAGCGTCGCATGTGAATTTCCTTCTAGCAAGGCTGT
TGATTTGTGACGCGGTGTAATTTAATGCGCAGAGGAAGCCCAGATAATCG
TCAACCGTTAGATCGTAAACCAACCCGGGATTAAGGGCTGATACTGGATT
AACGTGTCCAGCACCATGATCAAACGGTGTGGATGCTTTTCCCGTAGCGA
TATCTTGCAATTTCTGGCCATTTTTGTACGAGACATAAGCTGTTGTCATG
AGAGCTGACCTTATAGCTGCAGGGCTCCATT
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