CX069780

Overview
NameCX069780
Unique NameCX069780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: AB15B_ARATH (ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.088e-44
Identity = 87/174 (50.00%), Postives = 119/174 (68.39%), Query Frame = -2
Query:    2 LSVYFTDDHRDIKSQTRIYXXXXXXXXXXXFITNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQ-EDSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLIIRVFYTKAIMMK-MSEKVVKAQSKSSGLASEAVGNHSIITAF 517
            +SVYF   H +IK +TRIY           F+ N+ QHY F  MG  LT R+R+ +  K+LTFEV WFD+ E+S GAIC+RLA DA  V++LV D ++L+ Q VS+  +A  +GLV++W LALV I +QP+II  FYT+ +++K MS+K +KAQ +SS LA+EAV N   ITAF
Sbjct:  697 VSVYFLTSHDEIKEKTRIYALSFVGLAVLSFLINISQHYNFAYMGEYLTKRIRERMLSKVLTFEVGWFDRDENSSGAICSRLAKDANVVRSLVGDRMALVVQTVSAVTIAFTMGLVIAWRLALVMIAVQPVIIVCFYTRRVLLKSMSKKAIKAQDESSKLAAEAVSNVRTITAF 870          

HSP 2 Score: 37.7354 bits (86), Expect = 1.088e-44
Identity = 17/42 (40.48%), Postives = 23/42 (54.76%), Query Frame = -1
Query:  507 LWVMMAPRWKPALLGCVGGLCDGSIQPPCCFCLGGILSLICL 632
            L  M  P WK AL GC+     G+IQP   + LG ++S+  L
Sbjct:  661 LLAMNLPEWKQALYGCISATLFGAIQPAYAYSLGSMVSVYFL 702          
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: MDR_ORYSJ (Putative multidrug resistance protein OS=Oryza sativa subsp. japonica GN=Os02g0190300 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.002e-43
Identity = 85/174 (48.85%), Postives = 120/174 (68.97%), Query Frame = -2
Query:    2 LSVYFTDDHRDIKSQTRIYXXXXXXXXXXXFITNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQ-EDSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLIIRVFYTKAIMMK-MSEKVVKAQSKSSGLASEAVGNHSIITAF 517
            +SVYF  DH +IK +TR Y           F+ N+ QHY FG MG  LT R+R+ +  KILTFE+ WFD+ E+S GAIC++LA DA  V++LV D ++L+ Q +S+ ++A  +GLV++W LALV I +QPLII  FY + +++K MS+K + AQ++SS LA+EAV N   ITAF
Sbjct:  699 ISVYFLTDHAEIKDKTRTYALIFVGLAVLSFLINIGQHYNFGAMGEYLTKRIREQMLAKILTFEIGWFDRDENSSGAICSQLAKDANVVRSLVGDRMALVIQTISAVLIACTMGLVIAWRLALVMIAVQPLIIVCFYARRVLLKSMSKKSIHAQAESSKLAAEAVSNLRTITAF 872          

HSP 2 Score: 35.039 bits (79), Expect = 2.002e-43
Identity = 15/42 (35.71%), Postives = 24/42 (57.14%), Query Frame = -1
Query:  507 LWVMMAPRWKPALLGCVGGLCDGSIQPPCCFCLGGILSLICL 632
            L ++ AP WK AL+G    +  G IQP   + +G ++S+  L
Sbjct:  663 LLMLNAPEWKQALMGSFSAVVFGGIQPAYAYAMGSMISVYFL 704          
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: AB17B_ARATH (ABC transporter B family member 17 OS=Arabidopsis thaliana GN=ABCB17 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.590e-41
Identity = 91/186 (48.92%), Postives = 124/186 (66.67%), Query Frame = -2
Query:    2 LRVVSAWGESYHLSVYFTDDHRDIKSQTRIYXXXXXXXXXXXFITNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQED-SGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLIIRVFYTKAIMMK-MSEKVVKAQSKSSGLASEAVGNHSIITAF 553
            L+ VSA+     +SV+F   H  IK +TRIY           F+ N+ QHY F  MG  LT R+R+ +  KILTFEV WFD +D S GAIC+RLA DA  V+++V D +SLL Q +S+ I+A ++GLV++W LA+V I +QPLI+  FYT+ +++K +SEK  KAQ +SS LA+EAV N   ITAF
Sbjct:  685 LQPVSAYSAGSVISVFFLTSHDQIKEKTRIYVLLFVGLAIFSFLVNISQHYGFAYMGEYLTKRIREQMLSKILTFEVNWFDIDDNSSGAICSRLAKDANVVRSMVGDRMSLLVQTISAVIIACIIGLVIAWRLAIVMISVQPLIVVCFYTQRVLLKSLSEKASKAQDESSKLAAEAVSNIRTITAF 870          
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: AB18B_ARATH (ABC transporter B family member 18 OS=Arabidopsis thaliana GN=ABCB18 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.785e-38
Identity = 83/187 (44.39%), Postives = 121/187 (64.71%), Query Frame = -2
Query:    2 SLRVVSAWGESYHLSVYFTDDHRDIKSQTRIYXXXXXXXXXXXFITNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQ-EDSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLIIRVFYTKAIMMK-MSEKVVKAQSKSSGLASEAVGNHSIITAF 556
            +++ + ++     +SVYF   H  IK +TRIY           F++N+ QHY F  MG  LT R+R+ + GKILTFEV WFD+ E+S GAIC+RLA DA  V++LV D +SLL Q +S+  +   +GLV+SW  ++V + +QP+I+  FYT+ +++K MS   +K Q +SS LA+EAV N   ITAF
Sbjct:  669 AVQPIYSYSSGSMVSVYFLASHDQIKEKTRIYVLLFVGLALFTFLSNISQHYGFAYMGEYLTKRIRERMLGKILTFEVNWFDKDENSSGAICSRLAKDANMVRSLVGDRMSLLVQTISAVSITCAIGLVISWRFSIVMMSVQPVIVVCFYTQRVLLKSMSRNAIKGQDESSKLAAEAVSNIRTITAF 855          
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: AB22B_ARATH (ABC transporter B family member 22 OS=Arabidopsis thaliana GN=ABCB22 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.079e-37
Identity = 82/187 (43.85%), Postives = 122/187 (65.24%), Query Frame = -2
Query:    2 SLRVVSAWGESYHLSVYFTDDHRDIKSQTRIYXXXXXXXXXXXFITNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQ-EDSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLIIRVFYTKAIMMK-MSEKVVKAQSKSSGLASEAVGNHSIITAF 556
            +L  + A+     +SVYF   H ++K +TRIY           F+ ++ Q Y F  MG  LT R+R+ +  K+LTFEV WFD+ E+S G+IC+RLA DA  V++LV + +SLL Q +S+  +A  LGL +SW L++V I +QP+++  FYT+ I++K +S+K +KAQ +SS LA+EAV N   ITAF
Sbjct:  706 ALHPIYAYASGSMVSVYFLTSHDEMKEKTRIYVLLFVGLAVLCFLISIIQQYSFAYMGEYLTKRIRENILSKLLTFEVSWFDEDENSSGSICSRLAKDANVVRSLVGERVSLLVQTISAVSVACTLGLAISWKLSIVMIAIQPVVVGCFYTQRIVLKSISKKAIKAQDESSKLAAEAVSNIRTITAF 892          
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: AB16B_ARATH (ABC transporter B family member 16 OS=Arabidopsis thaliana GN=ABCB16 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.584e-36
Identity = 80/187 (42.78%), Postives = 119/187 (63.64%), Query Frame = -2
Query:    2 SLRVVSAWGESYHLSVYFTDDHRDIKSQTRIYXXXXXXXXXXXFITNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQED-SGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLIIRVFYTKAIMMK-MSEKVVKAQSKSSGLASEAVGNHSIITAF 556
            +++ + A+     +SV+F  +H  IK  TRIY           F T++ Q Y F  MG  LT R+R+ +  KILTFEV WFD+E+ S GAIC+RLA DA  V++LV + +SLL Q +S+ ++A  +GLV++W   +V I +QP+II  +Y + +++K MS+K + AQ +SS LA+EAV N   IT F
Sbjct:  670 AVQPIYAYSSGLMISVFFLTNHEQIKENTRIYVLLFFGLALFTFFTSISQQYSFSYMGEYLTKRIREQMLSKILTFEVNWFDEEENSSGAICSRLAKDANVVRSLVGERMSLLVQTISTVMVACTIGLVIAWRFTIVMISVQPVIIVCYYIQRVLLKNMSKKAIIAQDESSKLAAEAVSNIRTITTF 856          
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: AB8B_ARATH (Putative ABC transporter B family member 8 OS=Arabidopsis thaliana GN=ABCB8 PE=5 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.253e-30
Identity = 71/173 (41.04%), Postives = 106/173 (61.27%), Query Frame = -2
Query:    5 LSVYFTDDHRDIKSQTRIYXXXXXXXXXXXFITNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQEDS-GGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLIIRVFYTKAIMM-KMSEKVVKAQSKSSGLASEAVGNHSIITA 517
            +S +F    ++++ +  IY              N+ QHY F  MG RL  R+R  +  KI TFE  WFD E++    IC+RL  + + VK+LVAD +SLL Q +S   +A+++GL++SW LALV I +QPL I  FYTK +++ K+S     AQ++SS +ASEA+ NH I+T+
Sbjct:  701 ISAFFAKSSQEMQDKIHIYSLIFISLTFLSITLNLLQHYSFAKMGERLMQRLRLKMLEKIFTFEPAWFDVEENFTSEICSRLNNEVSIVKSLVADRISLLVQTISGVTIAMIIGLLISWKLALVMIAVQPLSILCFYTKKVLLSKISNNYAYAQNRSSQIASEAIYNHKIVTS 873          
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: AB14B_ARATH (ABC transporter B family member 14 OS=Arabidopsis thaliana GN=ABCB14 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.076e-23
Identity = 55/140 (39.29%), Postives = 85/140 (60.71%), Query Frame = -2
Query:    2 VFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFD-QEDSGGAICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLIIRVFYTKAIMMK-MSEKVVKAQSKSSGLASEAVGNHSIITAF 415
            + QHY++ +MG RLT+RVR +LF  IL+ E+ WFD  E++ G++ + LA DAT V++ +AD LS + QN+S  I A+ L    SW +A V     PL+I    T+ + +K       +A S+++ LA EA+ N   + AF
Sbjct:  742 ILQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAADATLVRSAIADRLSTIVQNLSLTITALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKGFGGDYTRAYSRATSLAREAISNIRTVAAF 881          

HSP 2 Score: 27.335 bits (59), Expect = 3.076e-23
Identity = 15/40 (37.50%), Postives = 21/40 (52.50%), Query Frame = -1
Query:  531 SGTLWVMM---APRWKPALLGCVGGLCDGSIQPPCCFCLG 641
            S  +W ++   AP W  ALLG +G +  GS   P  F +G
Sbjct:  666 SSMIWELIKLNAPEWLYALLGSIGAVLAGS--QPALFSMG 703          
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: AB1B_ARATH (ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.142e-22
Identity = 64/187 (34.22%), Postives = 96/187 (51.34%), Query Frame = -2
Query:    2 SLRVVSAWGESYHLSVYFTDDHRDIKSQTRIYXXXXXXXXXXXFITNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQEDSGGA-ICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLII-RVFYTKAIMMKMSEKVVKAQSKSSGLASEAVGNHSIITAF 556
            SL    A+  S  LSVY+  DH  +  Q   Y            + N  QH ++ I+G  LT RVR+ +   +L  E+ WFDQE++  A I ARLA DA  V++ + D +S++ QN +  ++A   G VL W LALV + + P+++      K  M   S  +  A +K + LA EA+ N   + AF
Sbjct:  712 SLSAFFAYVLSAVLSVYYNPDHEYMIKQIDKYCYLLIGLSSAALVFNTLQHSFWDIVGENLTKRVREKMLSAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKGTQLAGEAIANVRTVAAF 898          
BLAST of CX069780 vs. ExPASy Swiss-Prot
Match: AB19B_ARATH (ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.141e-22
Identity = 54/174 (31.03%), Postives = 99/174 (56.90%), Query Frame = -2
Query:    2 LSVYFTDDHRDIKSQTRIYXXXXXXXXXXXFITNVFQHYYFGIMGGRLTTRVRKTLFGKILTFEVEWFDQEDSGGA-ICARLATDATRVKTLVADYLSLLAQNVSSAILAVVLGLVLSWTLALVAIYMQPLIIRVFYTKAIMMK-MSEKVVKAQSKSSGLASEAVGNHSIITAF 517
            + V++  D+  ++ +T+ Y               + QHY+F IMG  LTTRVR+ +   IL  EV WFD+++   + I ARLATDA  VK+ +A+ +S++ QN++S + + ++  ++ W ++L+ +   PL++   + + + +K  +    KA +K+S +A E V N   + AF
Sbjct:  712 IEVFYYTDYDSMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWFDEDEHNSSLIAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAF 885          
The following BLAST results are available for this feature:
BLAST of CX069780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
AB15B_ARATH1.088e-4450.00ABC transporter B family member 15 OS=Arabidopsis ... [more]
MDR_ORYSJ2.002e-4348.85Putative multidrug resistance protein OS=Oryza sat... [more]
AB17B_ARATH4.590e-4148.92ABC transporter B family member 17 OS=Arabidopsis ... [more]
AB18B_ARATH2.785e-3844.39ABC transporter B family member 18 OS=Arabidopsis ... [more]
AB22B_ARATH3.079e-3743.85ABC transporter B family member 22 OS=Arabidopsis ... [more]
AB16B_ARATH7.584e-3642.78ABC transporter B family member 16 OS=Arabidopsis ... [more]
AB8B_ARATH1.253e-3041.04Putative ABC transporter B family member 8 OS=Arab... [more]
AB14B_ARATH3.076e-2339.29ABC transporter B family member 14 OS=Arabidopsis ... [more]
AB1B_ARATH2.142e-2234.22ABC transporter B family member 1 OS=Arabidopsis t... [more]
AB19B_ARATH8.141e-2231.03ABC transporter B family member 19 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12G03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12G03-N6-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069780 ID=CX069780; Name=CX069780; organism=Citrus sinensis; type=EST; length=821bp
CAAATGCTGTAATGATGCTGTGGTTGCCAACAGCCTCACTTGCTAATCCA
CTGCTCTTGCTCTGTGCTTTCACTACTTTCTCAGACATCTTCATCATTAT
TGCTTTAGTATAGAACACCCTAATAATCAATGGCTGCATATAAATGGCTA
CGAGTGCAAGTGTCCATGATAAAACCAGCCCCAAAACAACAGCTAAAATT
GCCGATGAGACATTCTGAGCTAACAGTGACAGGTAATCAGCTACAAGAGT
CTTAACCCTTGTCGCATCTGTAGCCAACCTTGCACATATAGCTCCACCAC
TGTCCTCTTGATCAAACCATTCAACCTCAAATGTTAAGATCTTGCCAAAG
AGTGTCTTTCTGACCCTTGTCGTCAGCCTCCCTCCCATTATTCCAAAGTA
ATAATGCTGAAACACATTCGTGATGAAAACAGAGACAGCAAAAGATAAAA
ATGCAAAGCTGTAGATTCTGGTTTGTGATTTAATATCTCTGTGATCGTCT
GTGAAATAGACAGATAAGTGATAAGATTCCCCCCAAGCAGAAACAACACG
GAGGCTGAATCGATCCATCGCATAGACCACCAACGCAGCCTAGTAGTGCC
GGCTTCCACCTGGGGGCCATCATTACCCATAAGGTGCCTGACTGATGGGG
AAACATTGTGATCTTCTTGCAACTTATCGGTTTTCCCGTCATGACTGGAA
CTTCGCATACCTAAGCTTTTCAGAATGTGAATCCAGTGCACTTGTGGCTT
CATCATGCAGCCGGAGTTTGGGGCCCCTTTACAATGCCCTTGAAATGGAA
GTCCTTTGTTTCTGCTCCTCT
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