CX069755

Overview
NameCX069755
Unique NameCX069755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069755_ssr405 microsatellite CX069755_ssr405:405..416. BLAST: Citrus ESTs to Populus V2 proteins
Csv1_Contig3838 contig Csv1_Contig3838:1..883. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_OENBE (ATP synthase subunit a OS=Oenothera bertiana GN=ATP6 PE=2 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 2.296e-65
Identity = 129/153 (84.31%), Postives = 131/153 (85.62%), Query Frame = -1
Query:  425 FVIXQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 883
            F   QGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLS                   LISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMN++FYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH
Sbjct:  129 FCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNDLFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 281          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_TOBAC (ATP synthase subunit a OS=Nicotiana tabacum GN=ATP6 PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.538e-64
Identity = 130/166 (78.31%), Postives = 134/166 (80.72%), Query Frame = -1
Query:  386 FVIXQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH*SGYLFIIEQKRV 883
            F   QGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQ+NGLHFLS                   LI YCFRALS GIRLFANMMAGHS VKILSGFAWTMLCMN++ YFIGDLGPLFIVLALTGLELGVAI QA+V TILICIYLNDAINLH S   FIIEQKRV
Sbjct:  230 FCNPQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQKNGLHFLSFLLPAGVPLPLAPFLVLLELIPYCFRALSSGIRLFANMMAGHSSVKILSGFAWTMLCMNDLLYFIGDLGPLFIVLALTGLELGVAISQAHVSTILICIYLNDAINLHQSASFFIIEQKRV 395          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP62_ARATH (ATP synthase subunit a-2 OS=Arabidopsis thaliana GN=ATP6-2 PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 6.251e-63
Identity = 126/153 (82.35%), Postives = 128/153 (83.66%), Query Frame = -1
Query:  425 FVIXQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 883
            F   QGMIPYSFTVTSHFLITL LSFSIFIGITIVGFQR+GLHF S                   LISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMN+IFYFIG LGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH
Sbjct:  197 FCNLQGMIPYSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNDIFYFIGALGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 349          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP61_ARATH (ATP synthase subunit a-1 OS=Arabidopsis thaliana GN=ATP6-1 PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 6.251e-63
Identity = 126/153 (82.35%), Postives = 128/153 (83.66%), Query Frame = -1
Query:  425 FVIXQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 883
            F   QGMIPYSFTVTSHFLITL LSFSIFIGITIVGFQR+GLHF S                   LISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMN+IFYFIG LGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH
Sbjct:  233 FCNLQGMIPYSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNDIFYFIGALGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 385          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_BRANA (ATP synthase subunit a OS=Brassica napus GN=ATP6 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 8.165e-63
Identity = 126/153 (82.35%), Postives = 127/153 (83.01%), Query Frame = -1
Query:  425 FVIXQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 883
            F   QGMIPYSFTVTSHFLITL LSFSIFIGITIVGFQR+GLHF S                   LISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMN IFYFIG LGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH
Sbjct:  108 FCNLQGMIPYSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNEIFYFIGALGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 260          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_VICFA (ATP synthase subunit a OS=Vicia faba GN=ATP6 PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 3.430e-61
Identity = 125/160 (78.12%), Postives = 129/160 (80.62%), Query Frame = -1
Query:  404 FVIXQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH*SGYLFI 883
            F   QGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLS                   LISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMN++ YFIGDLGPLFIVLALTG ELGVAI QA+V TI ICIYLNDA NLH +  LFI
Sbjct:  130 FCNLQGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNDLLYFIGDLGPLFIVLALTGPELGVAISQAHVSTISICIYLNDATNLHQTCLLFI 289          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_WHEAT (ATP synthase subunit a OS=Triticum aestivum GN=ATP6 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 9.342e-59
Identity = 119/149 (79.87%), Postives = 123/149 (82.55%), Query Frame = -1
Query:  425 QGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 871
            QGMIP+SFTVTSHFLITL LSFSIFIGITIVGFQR+GLHF S                   LISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTML +NNIFYFIGDLGPLFIVLALTGLELGVAI QA+V TI ICIYLNDA NLH
Sbjct:  231 QGMIPFSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLFLNNIFYFIGDLGPLFIVLALTGLELGVAISQAHVSTISICIYLNDATNLH 379          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_TRITI (ATP synthase subunit a OS=Triticum timopheevi GN=ATP6 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 9.342e-59
Identity = 119/149 (79.87%), Postives = 123/149 (82.55%), Query Frame = -1
Query:  425 QGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 871
            QGMIP+SFTVTSHFLITL LSFSIFIGITIVGFQR+GLHF S                   LISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTML +NNIFYFIGDLGPLFIVLALTGLELGVAI QA+V TI ICIYLNDA NLH
Sbjct:  231 QGMIPFSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLFLNNIFYFIGDLGPLFIVLALTGLELGVAISQAHVSTISICIYLNDATNLH 379          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_MAIZE (ATP synthase subunit a OS=Zea mays GN=ATP6 PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.491e-56
Identity = 115/149 (77.18%), Postives = 121/149 (81.21%), Query Frame = -1
Query:  425 QGMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 871
            QGMIP+SFTVTSHFLITL LSFSIFIGITIVGFQR+GLHF S                   LIS+CFRALS GIRLFANMMAGHS VKILSGFAWTML +NNIFYF+GDLGPLFIVLALTGLELGVAI QA+V TI ICIYLNDA NLH
Sbjct:  128 QGMIPFSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISHCFRALSSGIRLFANMMAGHSSVKILSGFAWTMLFLNNIFYFLGDLGPLFIVLALTGLELGVAISQAHVSTISICIYLNDATNLH 276          
BLAST of CX069755 vs. ExPASy Swiss-Prot
Match: ATP6_MARPO (ATP synthase subunit a OS=Marchantia polymorpha GN=ATP6 PE=3 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 3.673e-55
Identity = 113/148 (76.35%), Postives = 118/148 (79.73%), Query Frame = -1
Query:  425 GMIPYSFTVTSHFLITLGLSFSIFIGITIVGFQRNGLHFLSXXXXXXXXXXXXXXXXXXXLISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNIFYFIGDLGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH 868
            GMIPYSFTVTSHF+ITLGLSFS+FIGITIVGFQ +GLHF S                   LISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTML M  I Y +G L P FIV ALTGLELGVAILQAYVFTIL+CIYLNDAINLH
Sbjct:  106 GMIPYSFTVTSHFIITLGLSFSLFIGITIVGFQTHGLHFFSILLPQGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLSMGGILY-LGQLAPFFIVFALTGLELGVAILQAYVFTILLCIYLNDAINLH 252          
The following BLAST results are available for this feature:
BLAST of CX069755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
ATP6_OENBE2.296e-6584.31ATP synthase subunit a OS=Oenothera bertiana GN=AT... [more]
ATP6_TOBAC2.538e-6478.31ATP synthase subunit a OS=Nicotiana tabacum GN=ATP... [more]
ATP62_ARATH6.251e-6382.35ATP synthase subunit a-2 OS=Arabidopsis thaliana G... [more]
ATP61_ARATH6.251e-6382.35ATP synthase subunit a-1 OS=Arabidopsis thaliana G... [more]
ATP6_BRANA8.165e-6382.35ATP synthase subunit a OS=Brassica napus GN=ATP6 P... [more]
ATP6_VICFA3.430e-6178.13ATP synthase subunit a OS=Vicia faba GN=ATP6 PE=3 ... [more]
ATP6_WHEAT9.342e-5979.87ATP synthase subunit a OS=Triticum aestivum GN=ATP... [more]
ATP6_TRITI9.342e-5979.87ATP synthase subunit a OS=Triticum timopheevi GN=A... [more]
ATP6_MAIZE1.491e-5677.18ATP synthase subunit a OS=Zea mays GN=ATP6 PE=3 SV... [more]
ATP6_MARPO3.673e-5576.35ATP synthase subunit a OS=Marchantia polymorpha GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12F02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F02-L4-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069755 ID=CX069755; Name=CX069755; organism=Citrus sinensis; type=EST; length=883bp
TGCATGCTAAGATTCAAAGCTATCCATTCATCCTGAGTTCGGATCCGGCC
ACCCCTTCGGTCGATCGGTCAACTGACAGCGGTCAGCAGATAGATCGGAA
TCGCGTTAAGAAGATCATTCGATGGTTACCGTTAGTTGGGCCTCTCTTGG
AAGAGCCTCTTCACTGCACTCAGAAGACTAACCTAACTTAGTAGCCGTGC
TGGGATGGCATCGAGCAAGCAGCGGTAGCAGGGCCGGACCTAGTGCAAAA
GCAAAGAAGCAGAAGTCGAGGCAAGAGCTATACCTTCTGGAACCGGAGCA
ATAATTGCTATAAAGGAAGCAGATGCGCAGGAACGATCCCTAAAGCAAAT
ACTCGGAATGCTCCACGACTAAGTATACCCATTCAGACTCGCTTTTGTTC
AATTATAAATAAATAACCACTTTAATGGAGATTTATAGCATCATTCAAGT
AAATACAGATTAAGATCGTAAAAACATAAGCTTGTAATATAGCTACACCT
AATTCCAGGCCGGTTAATGCAAGAACTATAAATAAAGGACCAAGATCCCC
TATGAAATAGAAAATATTATTCATACATAGCATAGTCCAAGCGAACCCAC
TTAAAATCTTTACTAAACTATGACCGGCCATCATATTAGCAAATAAACGT
ATTCCTAAGCTTAATGCGCGAAAACAATAAGAGATTAGCTCAAGGAGTAC
TAAAAAAGGCGCTAACGGCAGTGGGACTCCTGCAGGTAAGAAGAAGCTTA
AAAAATGAAGCCCATTTCTTTGAAATCCCACTATAGTAATGCCAATAAAA
ATGGAAAATGAGAGACCCAAAGTAATGAGAAAATGGCTTGTAACTGTGAA
GCTATAAGGTATCATACCCTGGNAGATTACAAA
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