CX069753
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_CITSI (30S ribosomal protein S16, chloroplastic OS=Citrus sinensis GN=rps16 PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 3.690e-36 Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 3 Query: 63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKFY 290 Q AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKFY Sbjct: 13 QRAVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKFY 88
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_GOSHI (30S ribosomal protein S16, chloroplastic OS=Gossypium hirsutum GN=rps16 PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.774e-30 Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 3 Query: 63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKF 287 Q AVYRIVAID RSRREGRDLRKVGFYDPINNQT+LNVPAILYFL KGAQPT TVHDI +KAGVFTE++LNQTKF Sbjct: 13 QRAVYRIVAIDVRSRREGRDLRKVGFYDPINNQTYLNVPAILYFLEKGAQPTATVHDILKKAGVFTELTLNQTKF 87
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_GOSBA (30S ribosomal protein S16, chloroplastic OS=Gossypium barbadense GN=rps16 PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 5.161e-30 Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 3 Query: 63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKF 287 Q AVYRIV ID RSRREGRDLRKVGFYDPINNQT+LNVPAILYFL KGAQPT TVHDI +KAGVFTE++LNQTKF Sbjct: 13 QRAVYRIVVIDVRSRREGRDLRKVGFYDPINNQTYLNVPAILYFLEKGAQPTATVHDILKKAGVFTELTLNQTKF 87
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_VITVI (30S ribosomal protein S16, chloroplastic OS=Vitis vinifera GN=rps16 PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.150e-29 Identity = 65/75 (86.67%), Postives = 68/75 (90.67%), Query Frame = 3 Query: 63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKF 287 Q AVYRIVAID RSRREGRDLRKVGFYDPI NQT+ NVPAILYFL KGAQPTGTVHDIS+KA VFTE+ LNQTKF Sbjct: 13 QRAVYRIVAIDARSRREGRDLRKVGFYDPIKNQTYSNVPAILYFLEKGAQPTGTVHDISKKAEVFTELRLNQTKF 87
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_CUCSA (30S ribosomal protein S16, chloroplastic OS=Cucumis sativus GN=rps16 PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 3.699e-28 Identity = 61/70 (87.14%), Postives = 65/70 (92.86%), Query Frame = 3 Query: 69 AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQ 278 AVYRI+AID RSRREGRDLRKVGFYDPI NQT+LNVPAILYFL KGAQPTGTVHDI +KAGVFTE+ LNQ Sbjct: 16 AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ 85
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_NYMAL (30S ribosomal protein S16, chloroplastic OS=Nymphaea alba GN=rps16 PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.076e-27 Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 3 Query: 63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTK 284 Q A YRI+AID RSRREGRDLRKVGFYDPI NQT+LNVPAILYFL KGAQPTGTVHDIS+KA VF E+ +NQTK Sbjct: 13 QRATYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDISKKAEVFKELRVNQTK 86
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_LIRTU (30S ribosomal protein S16, chloroplastic OS=Liriodendron tulipifera GN=rps16 PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.406e-27 Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 3 Query: 63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTK 284 Q A+YRIVAID RSRREGRDLRKVGFYDPI NQT+ NVPAILYFL KGAQPTGTVHDIS+KA VF E+ +NQTK Sbjct: 13 QRAIYRIVAIDVRSRREGRDLRKVGFYDPIKNQTYSNVPAILYFLEKGAQPTGTVHDISKKAEVFKELRINQTK 86
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_SINAL (30S ribosomal protein S16, chloroplastic OS=Sinapis alba GN=rps16 PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.836e-27 Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 3 Query: 63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTK 284 Q AVYRIVAID RSRREGRDLRKVGFYDPI NQT+LN+PAIL FL KGAQPT TVHDIS+KAG+FTE++LN+TK Sbjct: 13 QRAVYRIVAIDVRSRREGRDLRKVGFYDPITNQTYLNLPAILDFLKKGAQPTRTVHDISKKAGIFTELNLNKTK 86
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_MORIN (30S ribosomal protein S16, chloroplastic OS=Morus indica GN=rps16 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.398e-27 Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = 3 Query: 63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLN-QTKF 287 Q A+YRIVAID RSRREGR LRKVGFYDPI NQT+LNVP ILYFL KGAQPTGTVHDIS+KAGVF E+ LN QTKF Sbjct: 13 QRAIYRIVAIDVRSRREGRALRKVGFYDPIKNQTYLNVPVILYFLEKGAQPTGTVHDISKKAGVFMELRLNHQTKF 88
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_PIPCE (30S ribosomal protein S16, chloroplastic OS=Piper cenocladum GN=rps16 PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 4.090e-27 Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 3 Query: 63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQT 281 Q AVYRIVAID RSRREGRDL+KVGFYDPI NQT+LNVPA+LYFL KGAQPTGTVHDIS+KA +F E+ +NQT Sbjct: 13 QRAVYRIVAIDVRSRREGRDLQKVGFYDPIKNQTYLNVPAVLYFLGKGAQPTGTVHDISKKAEIFKELRVNQT 85 The following BLAST results are available for this feature:
BLAST of CX069753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069753 ID=CX069753; Name=CX069753; organism=Citrus sinensis; type=EST; length=868bpback to top |