CX069753

Overview
NameCX069753
Unique NameCX069753
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_CITSI (30S ribosomal protein S16, chloroplastic OS=Citrus sinensis GN=rps16 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.690e-36
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKFY 290
            Q AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKFY
Sbjct:   13 QRAVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKFY 88          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_GOSHI (30S ribosomal protein S16, chloroplastic OS=Gossypium hirsutum GN=rps16 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.774e-30
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKF 287
            Q AVYRIVAID RSRREGRDLRKVGFYDPINNQT+LNVPAILYFL KGAQPT TVHDI +KAGVFTE++LNQTKF
Sbjct:   13 QRAVYRIVAIDVRSRREGRDLRKVGFYDPINNQTYLNVPAILYFLEKGAQPTATVHDILKKAGVFTELTLNQTKF 87          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_GOSBA (30S ribosomal protein S16, chloroplastic OS=Gossypium barbadense GN=rps16 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.161e-30
Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKF 287
            Q AVYRIV ID RSRREGRDLRKVGFYDPINNQT+LNVPAILYFL KGAQPT TVHDI +KAGVFTE++LNQTKF
Sbjct:   13 QRAVYRIVVIDVRSRREGRDLRKVGFYDPINNQTYLNVPAILYFLEKGAQPTATVHDILKKAGVFTELTLNQTKF 87          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_VITVI (30S ribosomal protein S16, chloroplastic OS=Vitis vinifera GN=rps16 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.150e-29
Identity = 65/75 (86.67%), Postives = 68/75 (90.67%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTKF 287
            Q AVYRIVAID RSRREGRDLRKVGFYDPI NQT+ NVPAILYFL KGAQPTGTVHDIS+KA VFTE+ LNQTKF
Sbjct:   13 QRAVYRIVAIDARSRREGRDLRKVGFYDPIKNQTYSNVPAILYFLEKGAQPTGTVHDISKKAEVFTELRLNQTKF 87          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_CUCSA (30S ribosomal protein S16, chloroplastic OS=Cucumis sativus GN=rps16 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.699e-28
Identity = 61/70 (87.14%), Postives = 65/70 (92.86%), Query Frame = 3
Query:   69 AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQ 278
            AVYRI+AID RSRREGRDLRKVGFYDPI NQT+LNVPAILYFL KGAQPTGTVHDI +KAGVFTE+ LNQ
Sbjct:   16 AVYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELHLNQ 85          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_NYMAL (30S ribosomal protein S16, chloroplastic OS=Nymphaea alba GN=rps16 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.076e-27
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTK 284
            Q A YRI+AID RSRREGRDLRKVGFYDPI NQT+LNVPAILYFL KGAQPTGTVHDIS+KA VF E+ +NQTK
Sbjct:   13 QRATYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDISKKAEVFKELRVNQTK 86          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_LIRTU (30S ribosomal protein S16, chloroplastic OS=Liriodendron tulipifera GN=rps16 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.406e-27
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTK 284
            Q A+YRIVAID RSRREGRDLRKVGFYDPI NQT+ NVPAILYFL KGAQPTGTVHDIS+KA VF E+ +NQTK
Sbjct:   13 QRAIYRIVAIDVRSRREGRDLRKVGFYDPIKNQTYSNVPAILYFLEKGAQPTGTVHDISKKAEVFKELRINQTK 86          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_SINAL (30S ribosomal protein S16, chloroplastic OS=Sinapis alba GN=rps16 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.836e-27
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQTK 284
            Q AVYRIVAID RSRREGRDLRKVGFYDPI NQT+LN+PAIL FL KGAQPT TVHDIS+KAG+FTE++LN+TK
Sbjct:   13 QRAVYRIVAIDVRSRREGRDLRKVGFYDPITNQTYLNLPAILDFLKKGAQPTRTVHDISKKAGIFTELNLNKTK 86          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_MORIN (30S ribosomal protein S16, chloroplastic OS=Morus indica GN=rps16 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.398e-27
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLN-QTKF 287
            Q A+YRIVAID RSRREGR LRKVGFYDPI NQT+LNVP ILYFL KGAQPTGTVHDIS+KAGVF E+ LN QTKF
Sbjct:   13 QRAIYRIVAIDVRSRREGRALRKVGFYDPIKNQTYLNVPVILYFLEKGAQPTGTVHDISKKAGVFMELRLNHQTKF 88          
BLAST of CX069753 vs. ExPASy Swiss-Prot
Match: RR16_PIPCE (30S ribosomal protein S16, chloroplastic OS=Piper cenocladum GN=rps16 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.090e-27
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 3
Query:   63 Q*AVYRIVAIDGRSRREGRDLRKVGFYDPINNQTHLNVPAILYFLAKGAQPTGTVHDISQKAGVFTEVSLNQT 281
            Q AVYRIVAID RSRREGRDL+KVGFYDPI NQT+LNVPA+LYFL KGAQPTGTVHDIS+KA +F E+ +NQT
Sbjct:   13 QRAVYRIVAIDVRSRREGRDLQKVGFYDPIKNQTYLNVPAVLYFLGKGAQPTGTVHDISKKAEIFKELRVNQT 85          
The following BLAST results are available for this feature:
BLAST of CX069753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RR16_CITSI3.690e-3698.6830S ribosomal protein S16, chloroplastic OS=Citrus... [more]
RR16_GOSHI1.774e-3088.0030S ribosomal protein S16, chloroplastic OS=Gossyp... [more]
RR16_GOSBA5.161e-3086.6730S ribosomal protein S16, chloroplastic OS=Gossyp... [more]
RR16_VITVI1.150e-2986.6730S ribosomal protein S16, chloroplastic OS=Vitis ... [more]
RR16_CUCSA3.699e-2887.1430S ribosomal protein S16, chloroplastic OS=Cucumi... [more]
RR16_NYMAL1.076e-2782.4330S ribosomal protein S16, chloroplastic OS=Nympha... [more]
RR16_LIRTU1.406e-2782.4330S ribosomal protein S16, chloroplastic OS=Liriod... [more]
RR16_SINAL1.836e-2782.4330S ribosomal protein S16, chloroplastic OS=Sinapi... [more]
RR16_MORIN2.398e-2782.8930S ribosomal protein S16, chloroplastic OS=Morus ... [more]
RR16_PIPCE4.090e-2780.8230S ribosomal protein S16, chloroplastic OS=Piper ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_12F01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12F01-L2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069753 ID=CX069753; Name=CX069753; organism=Citrus sinensis; type=EST; length=868bp
CCGTACGAGGAGAAAACTTCTTATACGTTTCTAGGGGGGGTACTGTTCAT
CTATATCTATCCCAATGAGCCGTTTATCGAATCGTTGCAATTGATGGTCG
ATCCCGAAGAGAAGGAAGAGATCTTCGGAAAGTGGGTTTTTATGATCCGA
TAAATAATCAAACCCATTTAAATGTTCCTGCTATTCTATATTTCCTTGCC
AAGGGCGCTCAACCTACAGGAACCGTTCATGATATTTCACAGAAAGCGGG
GGTTTTTACAGAAGTTAGTCTTAATCAAACGAAATTCTATTAAGGAATAG
AACAAAAAAGAGGGTGTGGATGCGCTTTATCTAGTTTTGTATAATTTTTT
CTTTACTATCCCCCCTTTTGTTCTATTCAGACCTATTTCTTTTCGGTTTT
TTTTTGAAGTCTTTCTCTAAAACTCTAAAAAAGTATTCTTAAAGTTTTTT
ATTTATCTAATTCTTTAGATATTATTTATTAATTTCCATATTTATTATAT
CTATTTATTAATATATAATTTGATTTGTTATTTGGATTTGAATTCAATTT
AATAAATAACCAATTAACTCTTTTTGTTTTTGTTATTGTATGTTTTTAGT
ATTTTCTCAATCTTGCTATTCAATATTCAATGTCATATTGACAATATTGT
AGTGAACAAATATAATTTTCTCATGGAGAAATGGGCCCATTTATCTCCGT
TCCATAGGTTTTGGTTGTCTTTTTTTTATGTTCAAAATCGATTAGAAATT
TTTTTGATTCGAGTTCTTGCTAATTTCATTTTTTGATTCCGTTTTGAAAT
TCCTTTTTTTTTTTTATTTTTTTTTATTCCGATTCTATCTACCCATTCGA
ATTATTTGGGTTGCTAAC
back to top