CX069751

Overview
NameCX069751
Unique NameCX069751
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length496
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4257 contig Csv1_Contig4257:517..1012. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX069751 vs. ExPASy Swiss-Prot
Match: EIF3K_ORYSJ (Eukaryotic translation initiation factor 3 subunit K OS=Oryza sativa subsp. japonica GN=TIF3K1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.659e-20
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = 2 
Query:   98 AINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRIFPIL 295
            AIN++GL+LDKFLEH  AN GW++E   + SQLIVLP NEFNHPELKKN A+++P EH+TRIFP+L
Sbjct:  161 AINIEGLALDKFLEHHIANSGWVIEKG-ARSQLIVLPRNEFNHPELKKNTAETVPFEHVTRIFPVL 225
[Close]
BLAST of CX069751 vs. ExPASy Swiss-Prot
Match: EIF3K_ARATH (Eukaryotic translation initiation factor 3 subunit K OS=Arabidopsis thaliana GN=TIF3K1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.901e-18
Identity = 42/67 (62.69%), Postives = 51/67 (76.12%), Query Frame = 2 
Query:   98 AINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRIFPILG 298
            A+N+ G SLDKF+E Q  N GWI+E +  +   IVLP NEFNHPELKKN  +++PLEHI RIFPILG
Sbjct:  163 AVNMDGASLDKFIEQQVTNSGWIVEKEGGS---IVLPQNEFNHPELKKNTGENVPLEHIARIFPILG 226
The following BLAST results are available for this feature:
BLAST of CX069751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EIF3K_ORYSJ1.659e-2068.18Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_ARATH5.901e-1862.69Eukaryotic translation initiation factor 3 subunit... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_12E12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12E12-J24-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069751 ID=CX069751; Name=CX069751; organism=Citrus sinensis; type=EST; length=496bp
TGAATCTCTGTCACTATAAAATCAAACTGAATGGTTAATCTGACACAGCC
TTTGTTGTTGGCCTTTCTTTTGAATTTCTGACACTGGATTTTTATAGGCT
ATCAATCTTAAAGGTCTATCTCTGGACAAATTCCTTGAACACCAGAAGGC
AAATTGTGGCTGGATTCTTGAAGGAGATCAAAGTACGAGCCAATTGATTG
TCCTGCCGCCTAATGAATTTAATCATCCCGAGCTGAAGAAGAATGTTGCT
GATAGCATCCCGTTAGAACACATTACCCGCATATTTCCCATTCTCGGTTG
ATTGAAGTTCAAATCCTGGCATTTGGTAAATTTTCATTTGTTTTAACCAG
ATGCTATAGCACTCTTGCAGTGAATTTTGGGGACTGCTGTAATCTCTTTT
TGTGTTTATGTTGAAAACATAGCCCAAGTGGCTTGGAGGAATTGATGAGA
CACAATGTTATTATTGGCATTTATTTTCTCTTAAAAAAAAAAAAAA
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