CX069744

Overview
NameCX069744
Unique NameCX069744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11576 contig Csv1_Contig11576:480..1160. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069744 vs. ExPASy Swiss-Prot
Match: LRC40_MOUSE (Leucine-rich repeat-containing protein 40 OS=Mus musculus GN=Lrrc40 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 53/148 (35.81%), Postives = 75/148 (50.68%), Query Frame = -3
Query:  200 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXLSQ-NSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN 640
            N L  VP D    +  L++L L  N   L   P F S   L+EL+L   Q+ +                 + N L+S+PE    L SL  LDLS+N+IS+            + L L+GNPLR+IRR I+ +GT+ VLKYL+ KI ++
Sbjct:  230 NLLETVPPD-VGSMESLELLYLRRN--KLRVLPEFPSCRQLKELHLAENQIEKLGAEHLQHLQAILVLDLRGNKLRSVPEEMALLQSLERLDLSNNDISSLPCSLGNLHL--KFLALEGNPLRTIRREIIAKGTQEVLKYLRSKIKDD 372          
The following BLAST results are available for this feature:
BLAST of CX069744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LRC40_MOUSE6.090e-1135.81Leucine-rich repeat-containing protein 40 OS=Mus m... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_12E08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12E08-J16-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069744 ID=CX069744; Name=CX069744; organism=Citrus sinensis; type=EST; length=681bp
TTTTTTTTGAACAAATCACTAACTTCATTTTCTCATGAGTATACATGTTA
CAAACTTTTACACTAAAGTATAGGCAAAGCATGAGGTGCTTCAAATCAAT
CTTTCGAATGAAAAATATAAGAACAAAGTAGCGACGTACGTTTGACTCAA
CCAATCTTGAAAGAGAAAGAGAGAAGGGATGGCAAACGGCAGCAAACTAG
TTCTCAGGAATTTTATCCTTCAAATATTTCAGAACTGCTTTCGTACCTCT
ATCTAAAATTGTCCTCCGGATGCTTCTCAATGGATTTCCATCTAGTCTTA
AAGCCTGTAGACTGGGTTCAAGCAAACCCAGCTCTGGGGGTAGTGCAGAA
ATGTTATTGTCTGACAGATCAAGCTCAGTGAGAGAAGTAAGGTTTTTGAA
CCCCTCAGGAATTGATTGAAGAGAGTTTTGACTCAAGTCAAGGATCCGCA
GTTGTTGCAACCTCAATATATCTGTAGGTGCTTCGCGAAGCTGCATTCTT
CTCAGGTAAAGCTCCTGCAAATGAGGTAAGCTGGAAAACGGTGGATTCTC
AGGTAATGAAGCAATGTTATAACTTAGATCCAAAATCTGGAGCATAGGAA
TATCTTTGAATCCATCTGATGGAACCTGTCTGAGTGGGTTATGTCCAGCT
TCAAACAAGAGAGGCTAGAGAGTGACGTTAA
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