CX069739

Overview
NameCX069739
Unique NameCX069739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4307 contig Csv1_Contig4307:1..621. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.103e-65
Identity = 127/163 (77.91%), Postives = 143/163 (87.73%), Query Frame = -3
Query:  116 IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCCAK 604
            IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITR S+F +V RWL+EL TH DT V +ML+GNKCDL+SIR VS EEGKSLAE EGLFFMETSALDSTNV+ AFE+VIREIYSNISRK LNSD+YK EL+VNRV+LVK   N ++G+   FSCC++
Sbjct:   56 IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNSDSYKEELTVNRVSLVK---NENEGT-KTFSCCSR 214          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 4.685e-65
Identity = 125/166 (75.30%), Postives = 145/166 (87.35%), Query Frame = -3
Query:  119 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCCA 616
            Q ++I+GKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRR++F SV RWL+EL  H DT V RMLVGNKCDL++IR VS EEGK+LAEEEGLFF+ETSALDSTNV+ AFE+VI +IY+N+SRK LNSD YK EL+VNRV+LVKD  ++SK S   FSCC+
Sbjct:   52 QSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQLNSDTYKDELTVNRVSLVKDDNSASKQS-SGFSCCS 216          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.185e-45
Identity = 88/164 (53.66%), Postives = 119/164 (72.56%), Query Frame = -3
Query:  119 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCCA 610
            + +DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDIT+  +F +V+RWL+EL  H D+ +  MLVGNK DL  +RDV TE  ++  E EGL F+ETSAL+STNVE AF+ ++ EIY  +S+KVL+S+  + ++   R  +V D A+   G      CC+
Sbjct:   54 IQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSEDNRPKIGEGRDVIVIDNAHDDGGKKKG-GCCS 216          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.040e-43
Identity = 83/130 (63.85%), Postives = 106/130 (81.54%), Query Frame = -3
Query:  215 IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSD 604
            ID K VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYDIT+R +F+ + RWLEEL  H D  +  +L+GNKCDL + RDV TE+ K  AE+EGLFF+ETSAL++TNVE+AF  V+ EIY+ +++K L +D
Sbjct:   61 IDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAAD 190          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 8.597e-43
Identity = 80/129 (62.02%), Postives = 107/129 (82.95%), Query Frame = -3
Query:  224 VDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVL 610
            + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDIT+R SF++V RWL EL  H D+++  M+VGNK DL  +R VS +EGK+LAE+EGLFF+ETSA+++ NVE AF+ +I E+Y  ++RK L
Sbjct:   54 LQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRKAL 182          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.573e-42
Identity = 84/166 (50.60%), Postives = 120/166 (72.29%), Query Frame = -3
Query:  119 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCCA 616
            + + ++GK VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDIT+R +F++V+RWL EL  H D+ +  M+ GNK DL  +R VS E+G++LAE+EGL F+ETSAL++ N+E AF+ ++ EIY  IS+K L +    + L     T+    A++++      SCC+
Sbjct:   52 RTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAAQEASSNLPGQGTTINVADASANQRR----SCCS 213          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.573e-42
Identity = 84/170 (49.41%), Postives = 120/170 (70.59%), Query Frame = -3
Query:  119 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSV----NRVTLVKDGANSSKGSMMDFSCCA 616
            + + ++GK VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDIT+R +F++V+RWL EL  H D+ +  M+ GNK DL+ +R VS ++G +L+E+EGL F+ETSAL++TN+E AF+ ++ EIY  +S+K L +    A  SV      + +     N+ KG      CC+
Sbjct:   52 RTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVADTSGNTKKG------CCS 215          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 169.474 bits (428), Expect = 1.241e-41
Identity = 79/131 (60.31%), Postives = 106/131 (80.92%), Query Frame = -3
Query:  224 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVL 616
            +   ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDIT+R +F++V RWL EL  H D+ +  M+ GNK DL+ +R V+ E+G+SLAE+EGL F+ETSAL++TNVE AF+ ++ EIY  IS+K L
Sbjct:   52 RTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKAL 182          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 3.612e-41
Identity = 84/131 (64.12%), Postives = 101/131 (77.10%), Query Frame = -3
Query:  224 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVL 616
            + + ID + VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYDIT+R SF+ V RWLEEL  H D  +  ML+GNK DL ++R V TE+ K  AE E LFFMETSAL+STNVE AF  V+ EIY  +S+K L
Sbjct:   58 RTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNL 188          
BLAST of CX069739 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.612e-41
Identity = 80/166 (48.19%), Postives = 118/166 (71.08%), Query Frame = -3
Query:  119 QVVDIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRSSFNSVKRWLEELTTHCDTAVGRMLVGNKCDLDSIRDVSTEEGKSLAEEEGLFFMETSALDSTNVEAAFEVVIREIYSNISRKVLNSDAYKAELSVNRVTLVKDGANSSKGSMMDFSCCA 616
            + + ++G+ VKAQIWDTAGQER+RA+TSAYYRGA+GAL+VYD+T+ ++F +V RWL+EL  H D+ +  ML+GNK DL  +R V+TE+ +S AE+EGL F+ETSAL++ NVE AF+ ++ E+Y  IS+K ++SD   A  ++     +   A S   +     CC+
Sbjct:   52 RTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSDQTTANANIKEGQTIDVAATSESNAKK--PCCS 215          
The following BLAST results are available for this feature:
BLAST of CX069739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARA4_ARATH2.103e-6577.91Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
ARA1_ARATH4.685e-6575.30Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
YPTC6_CHLRE9.185e-4553.66Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB11A_LOTJA5.040e-4363.85Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RGP2_ORYSJ8.597e-4362.02Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RB2BV_BETVU5.573e-4250.60Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RB11C_LOTJA5.573e-4249.41Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RAA2C_ARATH1.241e-4160.31Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RGP1_ORYSJ3.612e-4164.12Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RAA2A_ARATH3.612e-4148.19Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_12E06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12E06-J12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069739 ID=CX069739; Name=CX069739; organism=Citrus sinensis; type=EST; length=621bp
CTTTTTTTTGGTCTTCTAATTGGAAGATAGCTAGAAACAACACAAGCAGT
TTGTATTTGTACCGCCAAGGAAGGATAGGATCCTGTGTTATAAATGAAAG
AACAGCTAGAGCTTATTTAGCACAGCATGAGAAATCCATCATGCTGCCTT
TTGAAGAGTTGGCCCCATCCTTAACGAGGGTTACTCGATTGACAGACAAT
TCAGCTTTGTATGCATCAGAGTTGAGTACTTTCCTGCTGATATTGCTGTA
AATTTCTCGGATGACAACCTCAAAAGCAGCTTCAACATTAGTAGAATCAA
GAGCTGATGTCTCCATGAAGAACAATCCTTCTTCCTCCGCAAGGCTTTTG
CCCTCCTCTGTGCTAACATCTCTAATGCTATCCAAATCACACTTGTTCCC
CACCAGCATTCTTCCCACAGCAGTATCACAGTGAGTGGTGAGCTCCTCAA
GCCAGCGTTTAACACTGTTGAAGCTGCTTCTCCTGGTAATATCATAAACC
ACAAGAGCACCAACAGCTCCCCTGTAATAAGCAGAGGTAACAGCTCTAAA
TCTCTCTTGGCCGGCAGTGTCCCAGATCTGGGCCTTCACTTCTTTCCCAT
CAATATCCACCACTTGCGCCT
back to top