CX069727

Overview
NameCX069727
Unique NameCX069727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069727_ssr789 microsatellite CX069727_ssr789:789..798. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX069727 vs. ExPASy Swiss-Prot
Match: NTF6_TOBAC (Mitogen-activated protein kinase homolog NTF6 OS=Nicotiana tabacum GN=NTF6 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.598e-35
Identity = 69/97 (71.13%), Postives = 85/97 (87.63%), Query Frame = 2
Query:   77 MENESMV-MKDRGIPLYGGKYVQYNILGNLFQVSSKYVPPLQPIGRGAYGIVCSAVNSETKEEVAIKKITNAFDNRIDAKRILREIKLLCHMNHENV 364
            MENE+   ++ +GIP + GKYV+YN+LGN F+V+SKY+PP+QP+GRGAYG+VC A NSETKEEVAIKKI NAF+NRIDAKR LREIKLL HM+HEN+
Sbjct:    1 MENETNEKLEIKGIPTHEGKYVEYNVLGNFFEVTSKYIPPIQPVGRGAYGMVCCATNSETKEEVAIKKIGNAFENRIDAKRTLREIKLLSHMDHENI 97          
BLAST of CX069727 vs. ExPASy Swiss-Prot
Match: MMK2_MEDSA (Mitogen-activated protein kinase homolog MMK2 OS=Medicago sativa GN=MMK2 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.467e-34
Identity = 70/98 (71.43%), Postives = 83/98 (84.69%), Query Frame = 2
Query:   77 MENESMVMKDRGIPLYGGKYVQYNILGNLFQVSSKYVPPLQPIGRGAYGIVCSAVNSETKEEVAIKKITNAFDNRIDAKRILREIKLLCHMNHENVFT 370
            M  ES     RG+P +GG+Y+QYNI GNLF+VS KYVPP++ +GRGAYGIVC+AVN+ET+EEVAIKKI NAFDNRIDAKR LREIKLL HM+HENV +
Sbjct:    1 MSVESAENNIRGVPTHGGRYLQYNIYGNLFEVSRKYVPPIRSVGRGAYGIVCAAVNAETREEVAIKKIGNAFDNRIDAKRTLREIKLLRHMDHENVMS 98          
BLAST of CX069727 vs. ExPASy Swiss-Prot
Match: MPK13_ARATH (Mitogen-activated protein kinase 13 OS=Arabidopsis thaliana GN=MPK13 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.621e-33
Identity = 65/88 (73.86%), Postives = 77/88 (87.50%), Query Frame = 2
Query:  101 KDRGIPLYGGKYVQYNILGNLFQVSSKYVPPLQPIGRGAYGIVCSAVNSETKEEVAIKKITNAFDNRIDAKRILREIKLLCHMNHENV 364
            +D GI  Y G+YV YN+LGN+F++SSKY+PP++PIGRGAYGIVC A NSET EEVAIKKI NAFDNR+DAKR LREIKLL HM+H+NV
Sbjct:    5 EDGGILTYDGRYVMYNVLGNIFELSSKYIPPIEPIGRGAYGIVCCATNSETNEEVAIKKIANAFDNRVDAKRTLREIKLLSHMDHDNV 92          
BLAST of CX069727 vs. ExPASy Swiss-Prot
Match: MPK4_ARATH (Mitogen-activated protein kinase 4 OS=Arabidopsis thaliana GN=MPK4 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.373e-32
Identity = 67/86 (77.91%), Postives = 75/86 (87.21%), Query Frame = 2
Query:  107 RGIPLYGGKYVQYNILGNLFQVSSKYVPPLQPIGRGAYGIVCSAVNSETKEEVAIKKITNAFDNRIDAKRILREIKLLCHMNHENV 364
            +G+  +GG YVQYN+ GNLF+VS KYVPPL+PIGRGAYGIVC+A NSET EEVAIKKI NAFDN IDAKR LREIKLL HM+HENV
Sbjct:   17 KGVATHGGSYVQYNVYGNLFEVSRKYVPPLRPIGRGAYGIVCAATNSETGEEVAIKKIGNAFDNIIDAKRTLREIKLLKHMDHENV 102          
BLAST of CX069727 vs. ExPASy Swiss-Prot
Match: MPK6_ORYSJ (Mitogen-activated protein kinase 6 OS=Oryza sativa subsp. japonica GN=MPK6 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.381e-31
Identity = 63/86 (73.26%), Postives = 74/86 (86.05%), Query Frame = 2
Query:  107 RGIPLYGGKYVQYNILGNLFQVSSKYVPPLQPIGRGAYGIVCSAVNSETKEEVAIKKITNAFDNRIDAKRILREIKLLCHMNHENV 364
            +G+  +GG+YV YN+ GN F+VSSKY PP++PIGRGAYGIVC+AVNSE  EEVAIKKI NAFDN IDAKR LREIKLL HM+HEN+
Sbjct:   17 KGMGTHGGRYVLYNVYGNFFEVSSKYAPPIRPIGRGAYGIVCAAVNSENGEEVAIKKIGNAFDNHIDAKRTLREIKLLRHMDHENI 102          
BLAST of CX069727 vs. ExPASy Swiss-Prot
Match: MPK5_ARATH (Mitogen-activated protein kinase 5 OS=Arabidopsis thaliana GN=MPK5 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 5.767e-31
Identity = 60/86 (69.77%), Postives = 76/86 (88.37%), Query Frame = 2
Query:  107 RGIPLYGGKYVQYNILGNLFQVSSKYVPPLQPIGRGAYGIVCSAVNSETKEEVAIKKITNAFDNRIDAKRILREIKLLCHMNHENV 364
            +G+ ++GG+Y QYN+ GNLF+VS+KYVPP++PIGRGAYG VC+AV+SET EE+AIKKI  AFDN++DAKR LREIKLL H+ HENV
Sbjct:   17 KGVLVHGGRYFQYNVYGNLFEVSNKYVPPIRPIGRGAYGFVCAAVDSETHEEIAIKKIGKAFDNKVDAKRTLREIKLLRHLEHENV 102          
BLAST of CX069727 vs. ExPASy Swiss-Prot
Match: MPK11_ARATH (Mitogen-activated protein kinase 11 OS=Arabidopsis thaliana GN=MPK11 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.767e-31
Identity = 65/92 (70.65%), Postives = 77/92 (83.70%), Query Frame = 2
Query:  104 DRGIPLYGGKYVQYNILGNLFQVSSKYVPPLQPIGRGAYGIVCSAVNSETKEEVAIKKITNAFDNRIDAKRILREIKLLCHMNHENVFTSVN 379
            +RG+ + GG+YVQYN+ GNLF+VS KYVPPL+PIGRGA GIVC+A NSET EEVAIKKI NAF N IDAKR LREIKLL HM+H+NV   ++
Sbjct:   13 NRGVSINGGRYVQYNVYGNLFEVSKKYVPPLRPIGRGASGIVCAAWNSETGEEVAIKKIGNAFGNIIDAKRTLREIKLLKHMDHDNVIAIID 104          
BLAST of CX069727 vs. ExPASy Swiss-Prot
Match: MPK2_ORYSJ (Mitogen-activated protein kinase 2 OS=Oryza sativa subsp. japonica GN=MPK2 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.532e-31
Identity = 60/88 (68.18%), Postives = 78/88 (88.64%), Query Frame = 2
Query:  107 RGIPLYGGKYVQYNILGNLFQVSSKYVPPLQPIGRGAYGIVCSAVNSETKEEVAIKKITNAFDNRIDAKRILREIKLLCHMNHENVFT 370
            +G   +GG+YVQYN+ GNLF+VSSKYVPP++P+GRGA GI+C+ VN++T++EVAIKKI NAFDN+IDAKR LREIKLL HM+H+NV +
Sbjct:   35 KGTLTHGGRYVQYNVYGNLFEVSSKYVPPIRPVGRGACGIICAVVNAQTRQEVAIKKIGNAFDNQIDAKRTLREIKLLRHMDHDNVIS 122          
BLAST of CX069727 vs. ExPASy Swiss-Prot
Match: MPK12_ARATH (Mitogen-activated protein kinase 12 OS=Arabidopsis thaliana GN=MPK12 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.285e-30
Identity = 64/86 (74.42%), Postives = 74/86 (86.05%), Query Frame = 2
Query:  113 IPLYGGKYVQYNILGNLFQVSSKYVPPLQPIGRGAYGIVCSAVNSETKEEVAIKKITNAFDNRIDAKRILREIKLLCHMNHENVFT 370
            +P +GG+YVQYN+ G LF+VS KYVPP++PIGRGA GIVC+AVNS T E+VAIKKI NAFDN IDAKR LREIKLL HM+HENV T
Sbjct:   17 VPTHGGRYVQYNVYGQLFEVSRKYVPPIRPIGRGACGIVCAAVNSVTGEKVAIKKIGNAFDNIIDAKRTLREIKLLRHMDHENVIT 102          
BLAST of CX069727 vs. ExPASy Swiss-Prot
Match: NTF4_TOBAC (Mitogen-activated protein kinase homolog NTF4 OS=Nicotiana tabacum GN=NTF4 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.678e-30
Identity = 59/81 (72.84%), Postives = 73/81 (90.12%), Query Frame = 2
Query:  122 YGGKYVQYNILGNLFQVSSKYVPPLQPIGRGAYGIVCSAVNSETKEEVAIKKITNAFDNRIDAKRILREIKLLCHMNHENV 364
            +GG+++QYNI GN+F+V++KY PP+ PIG+GAYGIVCSA+NSET E VAIKKI NAFDN+IDAKR LREIKLL HM+HEN+
Sbjct:   39 HGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENI 119          
The following BLAST results are available for this feature:
BLAST of CX069727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
NTF6_TOBAC8.598e-3571.13Mitogen-activated protein kinase homolog NTF6 OS=N... [more]
MMK2_MEDSA1.467e-3471.43Mitogen-activated protein kinase homolog MMK2 OS=M... [more]
MPK13_ARATH1.621e-3373.86Mitogen-activated protein kinase 13 OS=Arabidopsis... [more]
MPK4_ARATH1.373e-3277.91Mitogen-activated protein kinase 4 OS=Arabidopsis ... [more]
MPK6_ORYSJ3.381e-3173.26Mitogen-activated protein kinase 6 OS=Oryza sativa... [more]
MPK5_ARATH5.767e-3169.77Mitogen-activated protein kinase 5 OS=Arabidopsis ... [more]
MPK11_ARATH5.767e-3170.65Mitogen-activated protein kinase 11 OS=Arabidopsis... [more]
MPK2_ORYSJ7.532e-3168.18Mitogen-activated protein kinase 2 OS=Oryza sativa... [more]
MPK12_ARATH1.285e-3074.42Mitogen-activated protein kinase 12 OS=Arabidopsis... [more]
NTF4_TOBAC1.678e-3072.84Mitogen-activated protein kinase homolog NTF4 OS=N... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12D10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12D10-H20-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069727 ID=CX069727; Name=CX069727; organism=Citrus sinensis; type=EST; length=832bp
GGCTTTACTTAAAAACGCGAGAACTCTTATCTTCTTTCTCATTCTTCTTC
GGCTTAAAAGTTGGTTTTTAAAAAAAATGGAGAACGAATCGATGGTGATG
AAAGACAGAGGGATTCCACTGTACGGTGGCAAATACGTACAGTACAATAT
TCTAGGAAACCTCTTTCAGGTCTCCTCTAAGTACGTTCCTCCTCTTCAGC
CTATTGGTCGCGGCGCATACGGCATCGTTTGTAGTGCTGTAAATTCAGAG
ACAAAAGAAGAGGTTGCAATAAAGAAAATTACGAATGCATTCGATAACAG
GATTGATGCCAAGAGGATCCTCCGTGAGATCAAACTCCTCTGTCACATGA
ATCATGAGAATGTATTTACTTCTGTAAACTTATAGGCTTGTTTACTGTCC
TGTGTTTTTCTAGCATTATTACTCTACTTTCACTTGCAAATCCCTGCTTC
TGATAAAAAGATGTTTTCCTAGAATTGCCTATATATATGTGTCTGGATTA
ATGATCTAGTGGGCGATGTTGCTCATGTTATGGTGAGCCATGCTGCTATG
TGGTGTGCTCTAGTTATCTATAGCTTCAACTCTATCTTTAAGGTGTTATA
GAATCATGTCATGTTTGCAGTTGCTCAATAGATCATTTTTCTGTGTATAC
ATATCCACACACAACAAATGATCTGGTAAGTGCAGTTCTATAATGCCTTG
TTAATGGTGTTGAAGTTGTTTAATCTGACAGGCCAACATGACAGTGTTGC
TCACTATAACGTGAGCAACGTCACCTATTAGATCATTACTCTCTCTCTAT
ATATAAGAATTCTAAAGTGTAGACATCTATTA
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