CX069720
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX069720 vs. ExPASy Swiss-Prot
Match: RFC2_SCHPO (Replication factor C subunit 2 OS=Schizosaccharomyces pombe GN=rfc2 PE=1 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 4.564e-16 Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 3 Query: 801 GYPCPPYKIIILDEADSMTEDAQACL 878 GYPCPP+KIIILDEADSMT+DAQA L Sbjct: 118 GYPCPPFKIIILDEADSMTQDAQAAL 143 HSP 2 Score: 50.0618 bits (118), Expect = 4.564e-16 Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 2 Query: 596 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 697 P+L KSRVLELNASD+RGI+++R K+K+FA V Sbjct: 79 PQLMKSRVLELNASDERGISIIREKVKSFAKTTV 112
BLAST of CX069720 vs. ExPASy Swiss-Prot
Match: RFC2_YEAST (Replication factor C subunit 2 OS=Saccharomyces cerevisiae GN=RFC2 PE=1 SV=1) HSP 1 Score: 50.447 bits (119), Expect = 3.711e-15 Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 3 Query: 804 YPCPPYKIIILDEADSMTEDAQACL 878 YPCPPYKIIILDEADSMT DAQ+ L Sbjct: 129 YPCPPYKIIILDEADSMTADAQSAL 153 HSP 2 Score: 50.0618 bits (118), Expect = 3.711e-15 Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 2 Query: 596 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 697 P+L KSR+LELNASD+RGI++VR K+K FA + V Sbjct: 85 PDLMKSRILELNASDERGISIVREKVKNFARLTV 118
BLAST of CX069720 vs. ExPASy Swiss-Prot
Match: RFC4_MOUSE (Replication factor C subunit 4 OS=Mus musculus GN=Rfc4 PE=1 SV=1) HSP 1 Score: 51.2174 bits (121), Expect = 3.914e-14 Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 2 Query: 596 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 718 PEL++ RVLELNASD+RGI VVR K+K FA + V + G Sbjct: 98 PELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDG 138 HSP 2 Score: 45.8246 bits (107), Expect = 3.914e-14 Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 3 Query: 801 GYPCPPYKIIILDEADSMTEDAQACL 878 G PCPP+KI+ILDEADSMT AQA L Sbjct: 138 GKPCPPFKIVILDEADSMTSAAQAAL 163
BLAST of CX069720 vs. ExPASy Swiss-Prot
Match: RFC4_HUMAN (Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2) HSP 1 Score: 51.2174 bits (121), Expect = 3.914e-14 Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 2 Query: 596 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 718 PEL++ RVLELNASD+RGI VVR K+K FA + V + G Sbjct: 98 PELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDG 138 HSP 2 Score: 45.8246 bits (107), Expect = 3.914e-14 Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 3 Query: 801 GYPCPPYKIIILDEADSMTEDAQACL 878 G PCPP+KI+ILDEADSMT AQA L Sbjct: 138 GKPCPPFKIVILDEADSMTSAAQAAL 163
BLAST of CX069720 vs. ExPASy Swiss-Prot
Match: RFC2_PHANO (Replication factor C subunit 2 OS=Phaeosphaeria nodorum GN=RFC2 PE=3 SV=1) HSP 1 Score: 49.6766 bits (117), Expect = 6.584e-14 Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 2 Query: 596 PELYKSRVLELNASDDRGINVVRTKIKTFA 685 PEL KSRVLELNASD+RGI++VR K+K FA Sbjct: 93 PELMKSRVLELNASDERGISIVRQKVKDFA 122 HSP 2 Score: 46.595 bits (109), Expect = 6.584e-14 Identity = 19/25 (76.00%), Postives = 23/25 (92.00%), Query Frame = 3 Query: 804 YPCPPYKIIILDEADSMTEDAQACL 878 Y CPP+KII+LDEADSMT+DAQ+ L Sbjct: 153 YSCPPFKIIVLDEADSMTQDAQSAL 177
BLAST of CX069720 vs. ExPASy Swiss-Prot
Match: RFC4_DICDI (Probable replication factor C subunit 4 OS=Dictyostelium discoideum GN=rfc4 PE=3 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 5.632e-12 Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = 2 Query: 596 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 697 PEL K RVLELNASD+RGI VVRTKIK FA AV Sbjct: 70 PELMKQRVLELNASDERGIEVVRTKIKNFAGYAV 103 HSP 2 Score: 35.8094 bits (81), Expect = 5.632e-12 Identity = 17/24 (70.83%), Postives = 19/24 (79.17%), Query Frame = 3 Query: 807 PCPPYKIIILDEADSMTEDAQACL 878 P +K+IILDEADSMT DAQA L Sbjct: 113 PGATFKLIILDEADSMTTDAQAAL 136 The following BLAST results are available for this feature:
BLAST of CX069720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX069720 ID=CX069720; Name=CX069720; organism=Citrus sinensis; type=EST; length=880bpback to top |