CX069720

Overview
NameCX069720
Unique NameCX069720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069720_ssr263 microsatellite CX069720_ssr263:263..274. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX069720 vs. ExPASy Swiss-Prot
Match: RFC2_SCHPO (Replication factor C subunit 2 OS=Schizosaccharomyces pombe GN=rfc2 PE=1 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 4.564e-16
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 3
Query:  801 GYPCPPYKIIILDEADSMTEDAQACL 878
            GYPCPP+KIIILDEADSMT+DAQA L
Sbjct:  118 GYPCPPFKIIILDEADSMTQDAQAAL 143          

HSP 2 Score: 50.0618 bits (118), Expect = 4.564e-16
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 2
Query:  596 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 697
            P+L KSRVLELNASD+RGI+++R K+K+FA   V
Sbjct:   79 PQLMKSRVLELNASDERGISIIREKVKSFAKTTV 112          
BLAST of CX069720 vs. ExPASy Swiss-Prot
Match: RFC2_YEAST (Replication factor C subunit 2 OS=Saccharomyces cerevisiae GN=RFC2 PE=1 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 3.711e-15
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 3
Query:  804 YPCPPYKIIILDEADSMTEDAQACL 878
            YPCPPYKIIILDEADSMT DAQ+ L
Sbjct:  129 YPCPPYKIIILDEADSMTADAQSAL 153          

HSP 2 Score: 50.0618 bits (118), Expect = 3.711e-15
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 2
Query:  596 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 697
            P+L KSR+LELNASD+RGI++VR K+K FA + V
Sbjct:   85 PDLMKSRILELNASDERGISIVREKVKNFARLTV 118          
BLAST of CX069720 vs. ExPASy Swiss-Prot
Match: RFC4_MOUSE (Replication factor C subunit 4 OS=Mus musculus GN=Rfc4 PE=1 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 3.914e-14
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 2
Query:  596 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 718
            PEL++ RVLELNASD+RGI VVR K+K FA + V   +  G
Sbjct:   98 PELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDG 138          

HSP 2 Score: 45.8246 bits (107), Expect = 3.914e-14
Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 3
Query:  801 GYPCPPYKIIILDEADSMTEDAQACL 878
            G PCPP+KI+ILDEADSMT  AQA L
Sbjct:  138 GKPCPPFKIVILDEADSMTSAAQAAL 163          
BLAST of CX069720 vs. ExPASy Swiss-Prot
Match: RFC4_HUMAN (Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2)

HSP 1 Score: 51.2174 bits (121), Expect = 3.914e-14
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 2
Query:  596 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 718
            PEL++ RVLELNASD+RGI VVR K+K FA + V   +  G
Sbjct:   98 PELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDG 138          

HSP 2 Score: 45.8246 bits (107), Expect = 3.914e-14
Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 3
Query:  801 GYPCPPYKIIILDEADSMTEDAQACL 878
            G PCPP+KI+ILDEADSMT  AQA L
Sbjct:  138 GKPCPPFKIVILDEADSMTSAAQAAL 163          
BLAST of CX069720 vs. ExPASy Swiss-Prot
Match: RFC2_PHANO (Replication factor C subunit 2 OS=Phaeosphaeria nodorum GN=RFC2 PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 6.584e-14
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 2
Query:  596 PELYKSRVLELNASDDRGINVVRTKIKTFA 685
            PEL KSRVLELNASD+RGI++VR K+K FA
Sbjct:   93 PELMKSRVLELNASDERGISIVRQKVKDFA 122          

HSP 2 Score: 46.595 bits (109), Expect = 6.584e-14
Identity = 19/25 (76.00%), Postives = 23/25 (92.00%), Query Frame = 3
Query:  804 YPCPPYKIIILDEADSMTEDAQACL 878
            Y CPP+KII+LDEADSMT+DAQ+ L
Sbjct:  153 YSCPPFKIIVLDEADSMTQDAQSAL 177          
BLAST of CX069720 vs. ExPASy Swiss-Prot
Match: RFC4_DICDI (Probable replication factor C subunit 4 OS=Dictyostelium discoideum GN=rfc4 PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 5.632e-12
Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = 2
Query:  596 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 697
            PEL K RVLELNASD+RGI VVRTKIK FA  AV
Sbjct:   70 PELMKQRVLELNASDERGIEVVRTKIKNFAGYAV 103          

HSP 2 Score: 35.8094 bits (81), Expect = 5.632e-12
Identity = 17/24 (70.83%), Postives = 19/24 (79.17%), Query Frame = 3
Query:  807 PCPPYKIIILDEADSMTEDAQACL 878
            P   +K+IILDEADSMT DAQA L
Sbjct:  113 PGATFKLIILDEADSMTTDAQAAL 136          
The following BLAST results are available for this feature:
BLAST of CX069720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RFC2_SCHPO4.564e-1688.46Replication factor C subunit 2 OS=Schizosaccharomy... [more]
RFC2_YEAST3.711e-1588.00Replication factor C subunit 2 OS=Saccharomyces ce... [more]
RFC4_MOUSE3.914e-1458.54Replication factor C subunit 4 OS=Mus musculus GN=... [more]
RFC4_HUMAN3.914e-1458.54Replication factor C subunit 4 OS=Homo sapiens GN=... [more]
RFC2_PHANO6.584e-1476.67Replication factor C subunit 2 OS=Phaeosphaeria no... [more]
RFC4_DICDI5.632e-1279.41Probable replication factor C subunit 4 OS=Dictyos... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_12D06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12D06-H12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069720 ID=CX069720; Name=CX069720; organism=Citrus sinensis; type=EST; length=880bp
CCCCCCCTCGAGACAGCCAATGTAACACTTCCACTTTCAATTTCAAGTTT
CTCATTCTAATTATTGATCTTATGATTATATGTTGAATTAAAAAAGTTTA
AAAACCCTAGCTGTTAATGTTATTTTTTTAATAATTTTTTGTTCTGCTGA
AGTGCCCACACATGTTATTTTACGGCCCACCTGGCACCGGAAAAACCACC
ACTGCCCTCGCCATCGCCCACCAGCTTTTCGGGTACTCTTCTTGTAATAT
TTGTTATTCACCTATTTATTTATTCTAAATACTCTTTCAGTTATTTTCGC
TTTGGGTGCAAACTAGTTATACAAACTGATGTGTCATAAAATTAATAAAA
AGAGATTAGAATAGATTATGTGGCAATCGTAAAATCAATAAAAGAAGAGA
TGATGCGGCAATGACATTGATAATCGTCAATGACATTGATATTTTTCATT
TTACATCACCAATTGTATTGTGCCAATTAGTTGGTATAATTGATACTGTA
CATTTAGTGTTACTCTTCATTATTTGATTTCATTTGAAAGAATGCTTAGG
CCATTATTTCTATTTGTTTCTCTAATTTAATCACACTGTTGTAGGCCTGA
ACTTTACAAGTCCAGAGTGCTAGAGCTGAATGCAAGTGATGACCGTGGGA
TTAATGTTGTTCGTACCAAAATTAAAACTTTTGCTGCCGTGGCTGTAGGC
TCTGGTCAGCGACGAGGGTATATATATTCCTGTCTTGTATTCTTTTCCGT
TCCGTTTCCTAATTACGTGTCAGCTGATTTTTTTTCTTCAACACTTCAGG
GGTTATCCTTGTCCCCCATATAAGATTATTATTTTAGATGAAGCAGATTC
CATGACTGAAGATGCTCAGGCATGTTTGTT
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