CX069719

Overview
NameCX069719
Unique NameCX069719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4306 contig Csv1_Contig4306:2564..3377. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_SOLLC (Cytochrome b6-f complex subunit 4 OS=Solanum lycopersicum GN=petD PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.887e-21
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI
Sbjct:    3 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 48
[Close]
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_SOLBU (Cytochrome b6-f complex subunit 4 OS=Solanum bulbocastanum GN=petD PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.887e-21
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI
Sbjct:    3 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 48
[Close]
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_PIPCE (Cytochrome b6-f complex subunit 4 OS=Piper cenocladum GN=petD PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.887e-21
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI
Sbjct:    3 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 48
[Close]
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_DRIGR (Cytochrome b6-f complex subunit 4 OS=Drimys granadensis GN=petD PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.887e-21
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI
Sbjct:    3 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 48
[Close]
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_WHEAT (Cytochrome b6-f complex subunit 4 OS=Triticum aestivum GN=petD PE=3 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 1.161e-20
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            +TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI
Sbjct:    3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 48
[Close]
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_VITVI (Cytochrome b6-f complex subunit 4 OS=Vitis vinifera GN=petD PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.161e-20
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            +TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI
Sbjct:    3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 48
[Close]
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_TOBAC (Cytochrome b6-f complex subunit 4 OS=Nicotiana tabacum GN=petD PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.161e-20
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            +TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI
Sbjct:    3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 48
[Close]
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_SPIOL (Cytochrome b6-f complex subunit 4 OS=Spinacia oleracea GN=petD PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.161e-20
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            +TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI
Sbjct:    3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 48
[Close]
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_SOYBN (Cytochrome b6-f complex subunit 4 OS=Glycine max GN=petD PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.161e-20
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            +TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI
Sbjct:    3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 48
[Close]
BLAST of CX069719 vs. ExPASy Swiss-Prot
Match: PETD_SORBI (Cytochrome b6-f complex subunit 4 OS=Sorghum bicolor GN=petD PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.161e-20
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:  676 ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 813
            +TKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI
Sbjct:    3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTI 48
The following BLAST results are available for this feature:
BLAST of CX069719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
PETD_SOLLC8.887e-21100.00Cytochrome b6-f complex subunit 4 OS=Solanum lycop... [more]
PETD_SOLBU8.887e-21100.00Cytochrome b6-f complex subunit 4 OS=Solanum bulbo... [more]
PETD_PIPCE8.887e-21100.00Cytochrome b6-f complex subunit 4 OS=Piper cenocla... [more]
PETD_DRIGR8.887e-21100.00Cytochrome b6-f complex subunit 4 OS=Drimys granad... [more]
PETD_WHEAT1.161e-2097.83Cytochrome b6-f complex subunit 4 OS=Triticum aest... [more]
PETD_VITVI1.161e-2097.83Cytochrome b6-f complex subunit 4 OS=Vitis vinifer... [more]
PETD_TOBAC1.161e-2097.83Cytochrome b6-f complex subunit 4 OS=Nicotiana tab... [more]
PETD_SPIOL1.161e-2097.83Cytochrome b6-f complex subunit 4 OS=Spinacia oler... [more]
PETD_SOYBN1.161e-2097.83Cytochrome b6-f complex subunit 4 OS=Glycine max G... [more]
PETD_SORBI1.161e-2097.83Cytochrome b6-f complex subunit 4 OS=Sorghum bicol... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_12D05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12D05-H10-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069719 ID=CX069719; Name=CX069719; organism=Citrus sinensis; type=EST; length=814bp
CCAACCGGCACCCCATAGAGAGGATAGGTTGGTTCGATTGAAAAGAATCT
TTTCTATGATCAGCCCCAAGCATGCCGCGCATGAGCAGGCTCCGTAAGAT
CCAGTAGAATAAGCGATGTGGCATAATCTAGATTATGTTTTCGCTAGATT
CTAGATTACTTACTTAATAGTATGGAAATGCATTCATTTCTTCTGCACCG
ATCCCGATTTATGATACTATCGGAGTGAAACAAGGGGTCTAAAGAAGAGC
AGCGGCTAGACTATATTAGTAACAAGTAAATCCTTTGTACGCGAAAAAGA
AAAATCTCAGCTCGATCTTTTTTTTTTTTTTGTTTTTGGATAAGGGTGAA
TCACAAGGGCTGAGACGACCCAGAAAGCTCTTGATCATGATCAATTTTGT
AAGCCTACTTGGGTATGGAGCATACACCTGTAAGAACCGAATTCCTTGCA
ATTGATAGTTGAAACTTCGTAAAACGGAATCCGGTAATTTTACATATAGA
ATCATCCCGATATGCGTAAAATATAGATTTTCGAAAATCTATATTTCTTT
TTTTATCTATTTCTTTTTTTATATGTATCCTTTTAGTTTGGTTGATTCTT
GCTCGAGCCGGATGATGAAAAATTATCATGTCCGGTTCTTTGGGGGGATG
GATCTATAAGAATTCGCCTATCCCAATAACAAAAAAACCTGACTTGAATG
ATCCTGTATTAAGGGCTAAGTTGGCTAAGGGTATGGGTCATAATTATTAT
GGAGAACCCGCATGGCCCAACGATCTTTTATATATTTTTCCAGTAGTAAT
TCTAGGTACTATTG
back to top