CX069718

Overview
NameCX069718
Unique NameCX069718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069718_ssr178 microsatellite CX069718_ssr178:178..189. BLAST: Citrus ESTs to Populus V2 proteins
Csv1_Contig4306 contig Csv1_Contig4306:1..887. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_CITSI (30S ribosomal protein S11, chloroplastic OS=Citrus sinensis GN=rps11 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.372e-30
Identity = 69/81 (85.19%), Postives = 69/81 (85.19%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_GOSHI (30S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum GN=rps11 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.563e-29
Identity = 68/81 (83.95%), Postives = 68/81 (83.95%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_GOSBA (30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense GN=rps11 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.563e-29
Identity = 68/81 (83.95%), Postives = 68/81 (83.95%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_CARPA (30S ribosomal protein S11, chloroplastic OS=Carica papaya GN=rps11 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.563e-29
Identity = 68/81 (83.95%), Postives = 68/81 (83.95%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_LOTJA (30S ribosomal protein S11, chloroplastic OS=Lotus japonicus GN=rps11 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.041e-29
Identity = 67/81 (82.72%), Postives = 68/81 (83.95%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KG+IHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIR VADQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGIIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVADQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_SOYBN (30S ribosomal protein S11, chloroplastic OS=Glycine max GN=rps11 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.482e-29
Identity = 67/81 (82.72%), Postives = 68/81 (83.95%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIR V+DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_POPTR (30S ribosomal protein S11, chloroplastic OS=Populus trichocarpa GN=rps11 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.547e-29
Identity = 67/81 (82.72%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGACGFRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_POPAL (30S ribosomal protein S11, chloroplastic OS=Populus alba GN=rps11 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.547e-29
Identity = 67/81 (82.72%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGACGFRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_MORIN (30S ribosomal protein S11, chloroplastic OS=Morus indica GN=rps11 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.547e-29
Identity = 67/81 (82.72%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTKRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107          
BLAST of CX069718 vs. ExPASy Swiss-Prot
Match: RR11_EUCGG (30S ribosomal protein S11, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps11 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.547e-29
Identity = 67/81 (82.72%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  644 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALR 886
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALR
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFNGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALR 107          
The following BLAST results are available for this feature:
BLAST of CX069718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR11_CITSI5.372e-3085.1930S ribosomal protein S11, chloroplastic OS=Citrus... [more]
RR11_GOSHI1.563e-2983.9530S ribosomal protein S11, chloroplastic OS=Gossyp... [more]
RR11_GOSBA1.563e-2983.9530S ribosomal protein S11, chloroplastic OS=Gossyp... [more]
RR11_CARPA1.563e-2983.9530S ribosomal protein S11, chloroplastic OS=Carica... [more]
RR11_LOTJA2.041e-2982.7230S ribosomal protein S11, chloroplastic OS=Lotus ... [more]
RR11_SOYBN3.482e-2982.7230S ribosomal protein S11, chloroplastic OS=Glycin... [more]
RR11_POPTR4.547e-2982.7230S ribosomal protein S11, chloroplastic OS=Populu... [more]
RR11_POPAL4.547e-2982.7230S ribosomal protein S11, chloroplastic OS=Populu... [more]
RR11_MORIN4.547e-2982.7230S ribosomal protein S11, chloroplastic OS=Morus ... [more]
RR11_EUCGG4.547e-2982.7230S ribosomal protein S11, chloroplastic OS=Eucaly... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12D05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12D05-H10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069718 ID=CX069718; Name=CX069718; organism=Citrus sinensis; type=EST; length=887bp
TTAATTACCGAATAACTTACCAAAGGTATGCTCCGGGTTCTTTTAGATAG
TTTAGAGAGCGAAGTAAGATTCTAGATTATGTTTCAGGAGGGATGCGACC
CGTTTTTCTACATCTACTCCCGGTGGCTAGAGGCAAAATTGAAGGAAGTC
GTTATGATTCAGATTCAACTGGAGGATATAATAATAATATATAGACTACA
CAAAAGGATTTGAGTGATTAGGTGATTTTTCAACATTCCTTTCAGGGGGA
TACAAATCGCGGTTCAAAAATTTCAAGAAACTTATTTTCTTCCAACTTCC
AATAAGTAGATTCGAAATTCATTTAAGGAATAACAATTATGAAAATAAGG
GCTTCAGTTCGTAAAATTTGTGAAAAATGTCGACTGATCCGCAGGAGGGG
ACGGATTATAGTAATTTGTTCCAACCCGAGACATAAACAAAGACAAGGAT
AATCTTTCGAAAAGTTTAGAAAGTAACCGATGAACAAATCAACATAAAAG
ATCGGTTTTGACATGAAATGGATATATCCATATATCTCTGACTTATATTT
ATGAAATGATCAAATATGGCAAAATCTCCACCACGAAGTGGTTCACGTAG
GCCGGGACGGATCGGTTCACGTAAAAGTGGACGTCGAATACCAAAGGGCG
TTATTCATGTTCAAGCAAGTTTCAACAACACCATTGTGACTGTTACAGAT
GTCCGGGGTCGGGTAATTTCTTGGTCCTCGGCCGGTACTTGTGGATTCAG
GGGTACAAGAAGAGGTACGCCTTTTGCTGCTCAAACCGCAGCAGGAAATG
CTATTCGAGCAGTAGCGGATCAAGGTATGCAACGAGCAGAAGTCATGATA
AAGGGTCCTGGTCTCGGAAGAGATGCGGCATTACGAG
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