CX069712

Overview
NameCX069712
Unique NameCX069712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5660 contig Csv1_Contig5660:754..1141. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 6.757e-20
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = -2 
Query:  238 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 384
            EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   99 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B3_SOLLC (Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.757e-20
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = -2 
Query:  238 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 384
            EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   89 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 137
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B10_ARATH (Histone H2B.10 OS=Arabidopsis thaliana GN=At5g22880 PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 6.757e-20
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = -2 
Query:  238 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 387
            GE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   96 GESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B_CAPAN (Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = -2 
Query:  238 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 384
            E+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   97 ESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B9_ARATH (Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570 PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = -2 
Query:  238 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 384
            E+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   84 ESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 132
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSJ (Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H2B.8 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = -2 
Query:  238 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 387
            GE+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  104 GESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSI (Histone H2B.8 OS=Oryza sativa subsp. indica GN=H2B.8 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = -2 
Query:  238 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 387
            GE+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  104 GESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B6_ORYSI (Histone H2B.6 OS=Oryza sativa subsp. indica GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = -2 
Query:  238 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 387
            GE+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  104 GESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B5_WHEAT (Histone H2B.5 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = -2 
Query:  238 GEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 387
            GE+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   87 GESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 136
[Close]
BLAST of CX069712 vs. ExPASy Swiss-Prot
Match: H2B5_ARATH (Histone H2B.5 OS=Arabidopsis thaliana GN=At3g09480 PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = -2 
Query:  238 EASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 384
            E+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   78 ESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 126
The following BLAST results are available for this feature:
BLAST of CX069712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
H2B_GOSHI6.757e-20100.00Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV... [more]
H2B3_SOLLC6.757e-20100.00Histone H2B.3 (Fragment) OS=Solanum lycopersicum G... [more]
H2B10_ARATH6.757e-2096.00Histone H2B.10 OS=Arabidopsis thaliana GN=At5g2288... [more]
H2B_CAPAN1.505e-1997.96Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3[more]
H2B9_ARATH1.505e-1997.96Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570... [more]
H2B8_ORYSJ1.505e-1994.00Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B8_ORYSI1.505e-1994.00Histone H2B.8 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B6_ORYSI1.505e-1994.00Histone H2B.6 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B5_WHEAT1.505e-1994.00Histone H2B.5 OS=Triticum aestivum PE=1 SV=3[more]
H2B5_ARATH1.505e-1997.96Histone H2B.5 OS=Arabidopsis thaliana GN=At3g09480... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_12C12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C12-F24-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069712 ID=CX069712; Name=CX069712; organism=Citrus sinensis; type=EST; length=388bp
TTTTTTTTTTTTTCCGAAATCACATTTCATTTTCATATTCTAACATAATG
AACATGCACATCACCTGGATCAGGTCCAAATTTCTAGTACATCCAAACAA
ACCCTAAAAATCCACCAAAGATTTGAAAACACAAAACATAAAAACGACTT
CATCTAGTAAAATTAAAGGCCTAAACTACTAACTACACAAATCACATAAC
ACCCGAATTCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGTAAAC
TTAGTAACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCTCACC
AGGAAGTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATCGTCG
GCTTCTTATTGTACCTTGCAAGCCTAGAAGCTTCCCCT
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